PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88323.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

GeBP

Protein Properties

Length: 434aa MW: 48883.3 Da PI: 4.9344

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	110.9	8.2e-35	193	287	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqr+w+ eDe+++L+++i+f +k+g+++s+d+++f++fvkk ++++++k+q++eK+rr+KkK+ + +ka++gkepsf k+hd+ ++elsk+iWg RWR88323.1 193 LFQRIWTPEDELSILKAIIEF-SKKGSDVSSDMNGFHQFVKKLLNVDMTKTQVSEKVRRMKKKYLNTAEKARNGKEPSFPKDHDKLMYELSKQIWG 287 79*****************.899********************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MAPKRQPSPP KHLSPPPSSS SSSGYEDEEE EEEEEVQNNS THISTPTSSQ PPKKPSSKKP 60 TSDLNQTPNP NSSTEEEDDD DEDEEEEDSE AEKAKKIQPK PTQIKKKEDE EEEEESDESG 120 SDSGSDSDLP PSKVKPIKPI TSKPMDSTPK PKKEAAAKPS TQKRPSASEL DSKKRKKPDA 180 GEEEEETGAK KQLFQRIWTP EDELSILKAI IEFSKKGSDV SSDMNGFHQF VKKLLNVDMT 240 KTQVSEKVRR MKKKYLNTAE KARNGKEPSF PKDHDKLMYE LSKQIWGVDV ETENNVERSG 300 GIAKRKKRTV DEKVEPKSPP PSKFSPVKEN PSVPKSIDLM PKNHSPLNGE VGNTLDLYPY 360 LNESLRSNGI LGASALTEMD VKRALELMGH SQLKEWEERC IELRSKERDV FMERTTLVYE 420 LAKQCYDLVK SSEE

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MAPKRQPSPP KHLSPPPSSS SSSGYEDEEE EEEEEVQNNS THISTPTSSQ PPKKPSSKKP  60
TSDLNQTPNP NSSTEEEDDD DEDEEEEDSE AEKAKKIQPK PTQIKKKEDE EEEEESDESG  120
SDSGSDSDLP PSKVKPIKPI TSKPMDSTPK PKKEAAAKPS TQKRPSASEL DSKKRKKPDA  180
GEEEEETGAK KQLFQRIWTP EDELSILKAI IEFSKKGSDV SSDMNGFHQF VKKLLNVDMT  240
KTQVSEKVRR MKKKYLNTAE KARNGKEPSF PKDHDKLMYE LSKQIWGVDV ETENNVERSG  300
GIAKRKKRTV DEKVEPKSPP PSKFSPVKEN PSVPKSIDLM PKNHSPLNGE VGNTLDLYPY  360
LNESLRSNGI LGASALTEMD VKRALELMGH SQLKEWEERC IELRSKERDV FMERTTLVYE  420
LAKQCYDLVK SSEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	177	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	4e-22	GeBP family protein