PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21020.5 Da PI: 10.2304 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.5 | 4.5e-10 | 9 | 49 | 1 | 41 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+ie k +r vt+sk ++g++KKA+ L ++ vavi f RWR87932.1 9 KKIEGKQKRFVTLSKKKEGLFKKAQKLALDFGVVVAVIGFT 49 689*************************9999999999775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MGKRKIEMKK IEGKQKRFVT LSKKKEGLFK KAQKLALDFG VVVAVIGFTV GGRPFSFGSS 60 SVDDIIDKYD QNHRLQFTEQ EKIHTVIHQE KSNIKLINSE GSIGNELMEY ASALTMLKDM 120 PVQTMAGISQ KNNCMDDHSI VKAKKETMGL LWTHALAEVF RLGSRAEKDT LTLILLRGRS 180 KTREGCC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-15 | M-type_MADS family protein |