PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87766.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 764aa MW: 85187.5 Da PI: 5.091

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.9	3.3e-29	85	168	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +++++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r ++s+++++ +qle RWR87766.1 85 RWPRQETLALLKIRSDMDATFKEATLKGPLWEDVSRKLAELGYNRNAKKCKEKFENVHKYYKRTKEGRAGR--QDSKNYRFSSQLE 168 8******************************************************************97..78999*99998 PP
2	trihelix	101.1	9e-32	458	543	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+++e+++ ++ k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a RWR87766.1 458 RWPKAEVLALIKLRTRLESKYHESGPKGPLWEDISIGMQQLGYKRSSKRCKEKWENINKYFKKVKESKKKR-PEDAKTCPYFHELDA 543 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MRQGGSQYGV SPVSYAGSQG QMLDQLQQQQ GDAATAVLAE AASPISSRPP VGANFDELGS 60 SAGGFPDEDA LVGDDVERGA TSGNRWPRQE TLALLKIRSD MDATFKEATL KGPLWEDVSR 120 KLAELGYNRN AKKCKEKFEN VHKYYKRTKE GRAGRQDSKN YRFSSQLEAL HSRNTSTNTT 180 SITAATTTPA VPISVIMVGN NPMVGSSIPA PMLVTSQRPD LTATTPAAGV YAAAAGFSFS 240 CNTSSSSGSE EEDDDDDDIE EGLNMDDTRK RRRTQMGSNC NKKMRVFFER LMKEVVEKQE 300 GMLQKFIETI EKREQDRMIR EEAWKMQEMA RLTHEQEIMA QERAISASRD AALIAFLQQI 360 TGQTVQIITQ IPIHTATPPL QPNPPPPPPQ LQTQQQQQQQ PQQRQQSNPP PQLQPQQLQQ 420 QSQVTEAIRH RAQSSELVLI QQEQPETMGV SIDPTSSRWP KAEVLALIKL RTRLESKYHE 480 SGPKGPLWED ISIGMQQLGY KRSSKRCKEK WENINKYFKK VKESKKKRPE DAKTCPYFHE 540 LDALYRSKLL KGGATGQGAN QEQEMDPGLS SNPQEARNVL AILPPPESQT TIEIKTNNNK 600 NGGNSGVGSS LQMETTCNGG LPPGFFEEGS VQKVIDSPNF LKLTFKSFFF NFANQNWNDA 660 CFALKPEDIV KELMGGDHND QKKHNHHHSE QQQAAMEHYN KLDDSDNIDQ DNEDDEDDDD 720 DFDDDDDDNE GDGKMAYKIQ YQRPNPSPSA QGNPSAGSFL AVVQ

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MRQGGSQYGV SPVSYAGSQG QMLDQLQQQQ GDAATAVLAE AASPISSRPP VGANFDELGS  60
SAGGFPDEDA LVGDDVERGA TSGNRWPRQE TLALLKIRSD MDATFKEATL KGPLWEDVSR  120
KLAELGYNRN AKKCKEKFEN VHKYYKRTKE GRAGRQDSKN YRFSSQLEAL HSRNTSTNTT  180
SITAATTTPA VPISVIMVGN NPMVGSSIPA PMLVTSQRPD LTATTPAAGV YAAAAGFSFS  240
CNTSSSSGSE EEDDDDDDIE EGLNMDDTRK RRRTQMGSNC NKKMRVFFER LMKEVVEKQE  300
GMLQKFIETI EKREQDRMIR EEAWKMQEMA RLTHEQEIMA QERAISASRD AALIAFLQQI  360
TGQTVQIITQ IPIHTATPPL QPNPPPPPPQ LQTQQQQQQQ PQQRQQSNPP PQLQPQQLQQ  420
QSQVTEAIRH RAQSSELVLI QQEQPETMGV SIDPTSSRWP KAEVLALIKL RTRLESKYHE  480
SGPKGPLWED ISIGMQQLGY KRSSKRCKEK WENINKYFKK VKESKKKRPE DAKTCPYFHE  540
LDALYRSKLL KGGATGQGAN QEQEMDPGLS SNPQEARNVL AILPPPESQT TIEIKTNNNK  600
NGGNSGVGSS LQMETTCNGG LPPGFFEEGS VQKVIDSPNF LKLTFKSFFF NFANQNWNDA  660
CFALKPEDIV KELMGGDHND QKKHNHHHSE QQQAAMEHYN KLDDSDNIDQ DNEDDEDDDD  720
DFDDDDDDNE GDGKMAYKIQ YQRPNPSPSA QGNPSAGSFL AVVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	273	RKRRR
2	269	274	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	1e-42	Trihelix family protein