PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87462.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 455aa MW: 49357.8 Da PI: 7.8808

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49	1.1e-15	276	321	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ +L++l+P++ K +Ka++L +++eY+k+Lq RWR87462.1 276 HNQSERKRRDRINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 321 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MSQCVPSWDL DESNNSSRIP FQADPNTNSA AAPEDAMLDY EVAELTWENG QLSMHGLGLP 60 RPAVKPLTTS GKCPWDKPRV GGTLESIVDQ ATSLPPPMGD ELVPWFAHHR AAPVATAIDA 120 LDPCSKRRSS GQESSTHVPD PDPSRQGFSK RIVESSTRVG SCSVAAKDET AAPAAARKRM 180 KVAGEGSSRE QSASRQVTMD TCEMDLDAGF TSSLGSHEHT SRGQPLSSRT KPTTVDDHDS 240 VCHSRPQREA GSGDEKHGKM GRSSISTKRS RAAAIHNQSE RKRRDRINQR MKTLQKLVPN 300 SSKTDKASML DEVIEYLKQL QAQIQMMSKM SSIPHMMMPM AMQQLQMSMM AQMGMGMGMG 360 MGVMDLSSIN RTGHHATTPV PPMLHPAAFL PLTAAAWDGS SDRLQPAAGV MPDPFSTAFL 420 ACQTQPMNLD AYNRMAALYQ QLQQSSGLTP PNSKT

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MSQCVPSWDL DESNNSSRIP FQADPNTNSA AAPEDAMLDY EVAELTWENG QLSMHGLGLP  60
RPAVKPLTTS GKCPWDKPRV GGTLESIVDQ ATSLPPPMGD ELVPWFAHHR AAPVATAIDA  120
LDPCSKRRSS GQESSTHVPD PDPSRQGFSK RIVESSTRVG SCSVAAKDET AAPAAARKRM  180
KVAGEGSSRE QSASRQVTMD TCEMDLDAGF TSSLGSHEHT SRGQPLSSRT KPTTVDDHDS  240
VCHSRPQREA GSGDEKHGKM GRSSISTKRS RAAAIHNQSE RKRRDRINQR MKTLQKLVPN  300
SSKTDKASML DEVIEYLKQL QAQIQMMSKM SSIPHMMMPM AMQQLQMSMM AQMGMGMGMG  360
MGVMDLSSIN RTGHHATTPV PPMLHPAAFL PLTAAAWDGS SDRLQPAAGV MPDPFSTAFL  420
ACQTQPMNLD AYNRMAALYQ QLQQSSGLTP PNSKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	285	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	9e-99	bHLH family protein