PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87414.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 276aa    MW: 30762.6 Da    PI: 4.5386
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.3e-231059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienk  rqv fskRr+g++KKA+ LS+LC++++av+ fs+ g+l+ +s+
  RWR87414.1 10 RIENKNARQVCFSKRRQGLFKKAKDLSILCGVDIAVLTFSPAGRLFSFSN 59
                8**********************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MGKRKIEMRR IENKNARQVC FSKRRQGLFK KAKDLSILCG VDIAVLTFSP AGRLFSFSNT  60
DIDSILDRYC KENYQCCRPS TTTTSTTTTS TSSNGEGGDD FWWEKVNVEE IDKGEELQQV  120
RKSLQDVRGK VASRIQELSS ASSSLRSLVP SSSDLTTCAE AEDVKWPPIS LDHLSRPCSM  180
GDESAANAMK TIYVKVEAPP LPPLQHDGVM QVESSSLDFA KDYDHGLMMP ISGGEDYDDG  240
LMKSISEEKD DDWLMMMSMI SGPSTETDFD DIFPLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.42e-23MIKC_MADS family protein