PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87407.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 406aa    MW: 45560.4 Da    PI: 4.3981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF572.5e-18156202147
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 
                 ++ie ks rqv fskR  g++K A+ELS+LC++++a++ +s+ g+l+
  RWR87407.1 156 EKIEKKSARQVCFSKRSLGLFKRAKELSILCGVDIAILTISPAGRLF 202
                 579*****************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MAGDALNFIE IFSSEDDRSP LKPSSIVKIE KDEKNMEDLD CIILDFDPFE NIDLSKKLSI  60
EDKPSADDIS IIFERGRVAC RDYPHSRHLC AKFPFDKTPH ESFCEQELGL GRGILGWKPP  120
GDAGSISILH GQMILDMRRS PLLNPWEREN EMKKIEKIEK KSARQVCFSK RSLGLFKRAK  180
ELSILCGVDI AILTISPAGR LFSSANTDID SILNRYCKEN YQCPTSTTSN GEGGANFWWE  240
KVNVEEIDEG KELQQLRESL GEVKEKLVSR IEELSSLSSL VLSSSNLTKC TAADVKWPSS  300
LDCFSQSSLG DESAANAMHT TNVEPPPLHL PHDGVMQVES LSLDFAKDDD VLMMPSFEED  360
YDNGLTKSIF EEVDDELMLM SMISRPSTET SFDDMFPPLN NQFGSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.12e-16M-type_MADS family protein