PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87287.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31012.2 Da    PI: 9.7691
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2631.7e-803428363301
   GAGA_bind  63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlse.......pqledsavelreeeklealpieeaaeeakekkkkkkrq 154
                 +d a+ +    + e++++++++   +n ++ + p + +  + +++ + l  ++         +++++  +l +++++  +p+ + ++ + e+k +k ++
  RWR87287.1  34 HDGAILDGSSGVSEHQHAYMKMSAFTNRSS-MVPEAAEFTDWVHQRNFLSATKAssipihaDEVNPDMDDLADMNMVLGTPVDTPQNGELETKPSKIKK 131
                 566777777778889999999988777544.33333333333333332222111223333378888888899999999999999999998888888777 PP

   GAGA_bind 155 rakkpkekkak....kkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                 +++ +k+++ +    k+k+ ++k+  ++kk+s++  ++k+ekk+ d+vl+g +lD s +P+P+CsCtG+ rqCY+WG+GGWqS+CCtt iS yPLP+s+
  RWR87287.1 132 HPSAKKSNHVSskvlKPKEPKKKTSPSTKKQSSSlATAKREKKNPDIVLDGTALDFSHVPTPMCSCTGVIRQCYRWGAGGWQSSCCTTCISEYPLPMSS 230
                 77777766655323344444444444444454445679************************************************************* PP

   GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  r+gaR+agrKmS+ga+ klL++L+aeG+dls+pvDLk+hWA+HGtnkfvtir
  RWR87287.1 231 SRPGARMAGRKMSNGAYLKLLQRLTAEGHDLSHPVDLKNHWARHGTNKFVTIR 283
                 ****************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MDGKGGLGIR NWNFSDQASS VNSVFKTISD CRVHDGAILD GSSGVSEHQH AYMKMSAFTN  60
RSSMVPEAAE FTDWVHQRNF LSATKASSIP IHADEVNPDM DDLADMNMVL GTPVDTPQNG  120
ELETKPSKIK KHPSAKKSNH VSSKVLKPKE PKKKTSPSTK KQSSSLATAK REKKNPDIVL  180
DGTALDFSHV PTPMCSCTGV IRQCYRWGAG GWQSSCCTTC ISEYPLPMSS SRPGARMAGR  240
KMSNGAYLKL LQRLTAEGHD LSHPVDLKNH WARHGTNKFV TIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.33e-62BBR-BPC family protein