PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87167.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 545aa MW: 58616.1 Da PI: 6.5887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.1e-11	370	417	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k Ka +L + ++Y++sLq RWR87167.1 370 SHSLAERVRREKINERMKLLQELVPGC----NKVTGKAVMLDEIINYVQSLQ 417 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEKEKLFMNC TGLQSSTPNW RSSMDVEGQL VEMNCSSNQF FNINWENSMD QSTPFGSAMN 60 SFVSSPGSSL NSAGPADSAV IGELIGRLGG LCHKNRELSP SQMAAATGGG GGGASFAGGS 120 TNIIDTPCYS TPLNSPPKRD LLMLDHQIRG NVAPFAADPE FAERAAKLSC FSSSNVGGMV 180 GQFSSLGVES GNLLGVSSNQ SLKIGPQIDG LQNKDKAIQD RLDAELRPNS ASGSAHDRKS 240 SKFSICSSPD EESSNAGVEA SASAGETSSK DTNEVNGRKR KAKGKELLQS SASFKDAKVD 300 LDDDNSNEKR CKSAEAFEKG KDVVRVKKEH SSNSNGGSGS RNQNKDLKLP EPSKQDYIHV 360 RARRGQATDS HSLAERVRRE KINERMKLLQ ELVPGCNKVT GKAVMLDEII NYVQSLQRQV 420 EFLSMKLAHV NPRLDFNMEA LLSKDILQLR GSLPQTVYPL DSLAAPVFSY GHQPQQGPPQ 480 TAISNGLETG SPSDATLRPS LGAQLPTSEG HANFSSQLAA LWENDLHNVF STSHRTETSE 540 NQYLI

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEKEKLFMNC TGLQSSTPNW RSSMDVEGQL VEMNCSSNQF FNINWENSMD QSTPFGSAMN  60
SFVSSPGSSL NSAGPADSAV IGELIGRLGG LCHKNRELSP SQMAAATGGG GGGASFAGGS  120
TNIIDTPCYS TPLNSPPKRD LLMLDHQIRG NVAPFAADPE FAERAAKLSC FSSSNVGGMV  180
GQFSSLGVES GNLLGVSSNQ SLKIGPQIDG LQNKDKAIQD RLDAELRPNS ASGSAHDRKS  240
SKFSICSSPD EESSNAGVEA SASAGETSSK DTNEVNGRKR KAKGKELLQS SASFKDAKVD  300
LDDDNSNEKR CKSAEAFEKG KDVVRVKKEH SSNSNGGSGS RNQNKDLKLP EPSKQDYIHV  360
RARRGQATDS HSLAERVRRE KINERMKLLQ ELVPGCNKVT GKAVMLDEII NYVQSLQRQV  420
EFLSMKLAHV NPRLDFNMEA LLSKDILQLR GSLPQTVYPL DSLAAPVFSY GHQPQQGPPQ  480
TAISNGLETG SPSDATLRPS LGAQLPTSEG HANFSSQLAA LWENDLHNVF STSHRTETSE  540
NQYLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-70	bHLH family protein