PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86955.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 352aa MW: 39130 Da PI: 7.6375

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.5e-09	182	229	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ l+P + +k Ka +L + ++Y++sLq RWR86955.1 182 SHSLAERVRRLKINERMKLLQGLVPGC----DKVTGKALMLDEIINYVQSLQ 229 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MAAFSFQQYP FHLDSHFLQN ISPKMPYFLE QEGMNASFFT QDPSDSLPIL VIAAATHESS 60 CLGTGTDAFI SENHVDCSNE ASVTEKQQTD SISSSLVTEV PQQNSPMDKK RQSRDGSYLN 120 SAGSKEAQEQ GKGKKRKKCN SSMEETEKKP KTDRKNKKKV SEEEPPTGFI HVRARRGQAT 180 DSHSLAERVR RLKINERMKL LQGLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLA 240 SISPVFYDFG ADLPADLSKS EKLSISQPLP AMQQSSHNQP TPISDSTKAV FPTTNNYPLL 300 DSSAAAFLQG ERPHKFSQDN TNLVWTHPVF FSLNGTALQA SGFQLQLKEK FT

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MAAFSFQQYP FHLDSHFLQN ISPKMPYFLE QEGMNASFFT QDPSDSLPIL VIAAATHESS  60
CLGTGTDAFI SENHVDCSNE ASVTEKQQTD SISSSLVTEV PQQNSPMDKK RQSRDGSYLN  120
SAGSKEAQEQ GKGKKRKKCN SSMEETEKKP KTDRKNKKKV SEEEPPTGFI HVRARRGQAT  180
DSHSLAERVR RLKINERMKL LQGLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLA  240
SISPVFYDFG ADLPADLSKS EKLSISQPLP AMQQSSHNQP TPISDSTKAV FPTTNNYPLL  300
DSSAAAFLQG ERPHKFSQDN TNLVWTHPVF FSLNGTALQA SGFQLQLKEK FT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	138	KKRKK
2	134	159	KKRKKCNSSMEETEKKPKTDRKNKKK
3	135	160	KKRKKCNSSMEETEKKPKTDRKNKKK
4	135	151	KRKKCNSSMEETEKKPK
5	148	159	KKPKTDRKNKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	9e-55	bHLH family protein