PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86781.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

GATA

Protein Properties

Length: 570aa MW: 63015.1 Da PI: 7.1829

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.7	2.4e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ RWR86781.1 7 CHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLTNYTPLHA RADIVDSVDF 60 KISKVKSITI KTKGHKFQKR KHYDNVEDKG EAPKSDHNFR KVLEEDTSNR SSSGSAISYS 120 ESCAQFGSAD ASSAQSNVWD SLVPSKKRTC VSRPKPSSVE KLTKDLYCIL HEQQSSNLSG 180 SSEEELIFES ETPLVSVEIG HGGVLIRHPN LVAREEESEA SSLPIDNKAC SATSDPVHTE 240 SKGTSLLNIG GDNIKKLAGP GAQEHMKRGK FPHDKLHILH SDSPLGSIDL RDVVSFEEFM 300 IHLTHEEQQQ LMKYLPYTDT AKLPESLKSM FGSPQFVDAL YSFQQLLLEG IFDTSFPGAA 360 TEERRLLKRL ALGNLTKSKW VERYQLLKDA RHKKAKDEKG VSIGTGFFAC GNLAPPKRPR 420 DGQNQDFPET KGTLKGPKMQ KCGSMNLPST RSHLNLSNMD LKESYDTKDM DNDGSCFSPR 480 SLFAFTLDRS SIMLDSLPFT DESSDQDLLF DVPPNAPLPQ AELLHFHPCK QKTPPDCSLA 540 ESEVTGNFPS LSLSSQLSNS SILYPHLVLP

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLTNYTPLHA RADIVDSVDF  60
KISKVKSITI KTKGHKFQKR KHYDNVEDKG EAPKSDHNFR KVLEEDTSNR SSSGSAISYS  120
ESCAQFGSAD ASSAQSNVWD SLVPSKKRTC VSRPKPSSVE KLTKDLYCIL HEQQSSNLSG  180
SSEEELIFES ETPLVSVEIG HGGVLIRHPN LVAREEESEA SSLPIDNKAC SATSDPVHTE  240
SKGTSLLNIG GDNIKKLAGP GAQEHMKRGK FPHDKLHILH SDSPLGSIDL RDVVSFEEFM  300
IHLTHEEQQQ LMKYLPYTDT AKLPESLKSM FGSPQFVDAL YSFQQLLLEG IFDTSFPGAA  360
TEERRLLKRL ALGNLTKSKW VERYQLLKDA RHKKAKDEKG VSIGTGFFAC GNLAPPKRPR  420
DGQNQDFPET KGTLKGPKMQ KCGSMNLPST RSHLNLSNMD LKESYDTKDM DNDGSCFSPR  480
SLFAFTLDRS SIMLDSLPFT DESSDQDLLF DVPPNAPLPQ AELLHFHPCK QKTPPDCSLA  540
ESEVTGNFPS LSLSSQLSNS SILYPHLVLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.1	1e-115	GATA family protein