PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86685.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 479aa MW: 52250.4 Da PI: 6.5026

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	84	100	3	19
ETTTTEEESSHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrH 19 C++Cgk F ++ ++ H RWR86685.1 84 CKNCGKEFASWKLFLEH 100 **************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MAVVMDQHQS FKYFCRICKK GFGCGRALGG HMRAHGIGDD GGHVDDDDPA SDWEEKLGGN 60 PPAGSKRMYA LRTNPDRLKS CRICKNCGKE FASWKLFLEH GKCSSDDAGS LVSSPEWEEE 120 EEAEEAGDEG GRSCGGWSKG KRSRRVVMVG NPNLNCPSSE EEDLANCLVM LSAARVDPLV 180 VETEESCASA SKEEERHRNY APAPIAEPIP VVGEKAKGVT RGMFECKACK KVFNSHQALG 240 GHRASHKKVK GCFAAKLEEL DENMVDDDVI THEEFSIAAA TTPSKAAISL LDHETSPLIK 300 RKHKVHECSI CHRVFASGQA LGGHKRCHWV TSSSPDTSIA KLHQLQDHNQ QLQLQLPQKP 360 KLDKSEPLDL NLPAQADDVG GSRRDNVCPL SLELPTATAL YLQQWIGIQS NNNNNSSNSN 420 NNHNNDNPSS MLHGRDEADS GIKLAKLSDL KDMKFAGAST PWLQVGIGST TTESSTHEH

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MAVVMDQHQS FKYFCRICKK GFGCGRALGG HMRAHGIGDD GGHVDDDDPA SDWEEKLGGN  60
PPAGSKRMYA LRTNPDRLKS CRICKNCGKE FASWKLFLEH GKCSSDDAGS LVSSPEWEEE  120
EEAEEAGDEG GRSCGGWSKG KRSRRVVMVG NPNLNCPSSE EEDLANCLVM LSAARVDPLV  180
VETEESCASA SKEEERHRNY APAPIAEPIP VVGEKAKGVT RGMFECKACK KVFNSHQALG  240
GHRASHKKVK GCFAAKLEEL DENMVDDDVI THEEFSIAAA TTPSKAAISL LDHETSPLIK  300
RKHKVHECSI CHRVFASGQA LGGHKRCHWV TSSSPDTSIA KLHQLQDHNQ QLQLQLPQKP  360
KLDKSEPLDL NLPAQADDVG GSRRDNVCPL SLELPTATAL YLQQWIGIQS NNNNNSSNSN  420
NNHNNDNPSS MLHGRDEADS GIKLAKLSDL KDMKFAGAST PWLQVGIGST TTESSTHEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-27	C2H2 family protein