PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86633.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 341aa MW: 35812.3 Da PI: 10.1632

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.5	2.4e-34	92	175	6	88
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 + +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl a+pai+++tgt++ +a ++ +++ + ++++s++ RWR86633.1 92 RVYKDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLDHAEPAIIAATGTGTVPAIATtIDGTLKIPTQSPSAE 175 5679********************************************************888875444333333333322222 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MESQKPEHEQ EDNRDGGNTS SSSGEGLSPP PSSVPPPSSA PSSSVPPQPQ QPSVTAPSTQ 60 LVQQLVYLKT EPVVEDRRLE FVSNKGPIVP RRVYKDRHTK VEGRGRRIRM PAVCAARIFQ 120 LTRELGHKSD GETIRWLLDH AEPAIIAATG TGTVPAIATT IDGTLKIPTQ SPSAEEGEAS 180 RKRRRRTEID KGTVSSGLAP IRPAGATAQS LMPMWAVSGG GGVLNPNPNM PTQTFLMIPP 240 SSAIAGSSNQ PQVWTFPSPA TPIINLAARP ISTVFSAVPG LNLATAVEIQ APTIANGGAT 300 AVATTTQAAT ARVVRDGKQE LQLMGGSANQ QQQSANPPST S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	185	RKRRR
2	181	187	RKRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-54	TCP family protein