PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR86629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26718.7 Da PI: 4.8626 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.8e-17 | 80 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r ++ +g+Wv+eIr+p+ + kr++lg+f tae+Aa+a++ a+++l+g RWR86629.1 80 PVYRGIR-CR-SGKWVSEIREPR----KaKRIWLGTFATAEMAAAAHDVAALALKG 129 68****9.55.6*********94....36************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MDYPMQQGHQ QPTVPPANAP HAADPHAPGD PYSNRKCMMH EPPQMGPPNN MLQWTHMPEN 60 TSVPHHPRPT QAATSAGKHP VYRGIRCRSG KWVSEIREPR KAKRIWLGTF ATAEMAAAAH 120 DVAALALKGA DAVINFPDSV HSNPVPASNS PSDIRAAAAA AAALRVSKSE EVGAAPDVEL 180 GGDGEENSSS QVQMGFREEF LDEEELYAMP ELMVSMAEGM LLSPPRLNSP ESDDPPESSD 240 GGNLWSYD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-32 | ERF family protein |