PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR86563.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB_related
Protein Properties Length: 321aa    MW: 34968.6 Da    PI: 8.9866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR86563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-133680147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       RWR86563.1 36 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 80
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MALPGLGSMS TTSNGGAASE DPNKKIRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK  60
IEAFVGSKTV IQIRSHAQKY FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA SKNAPLPSQA  120
TARFQSSSCL IEPGCGVMMD SSSMLRSSTP NAAMSSWAQN STLPVNASLN ASHVMKDAID  180
PVGPMIVKNY CCSSTETNPG TWPTCETTDR GTCGPPQVMP DFAQVYSFIG SVFDPNTSGH  240
LEKLKEMDPI NVEAVLLLMK NLSVNLSSPD FEGHRRVLSS YDVSKEAKPN NASNTIQASD  300
SHKAPSRLKL GDHQAPVPAA I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-89MYB_related family protein