PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85923.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family BBR-BPC
Protein Properties Length: 343aa    MW: 38338.7 Da    PI: 10.0828
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind365.79e-11213431301
   GAGA_bind   1 mdddgsre..rnkg.yye.............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                 mdd+g+re  r+++ +y+              + + +++ +++lm++iaerda+ +ernlal+ekkaa+aer+ma lqrd+a++ern+a+verd++++a
  RWR85923.1   1 MDDSGQREngRHRPdQYKgihaqwtplahhqMKDHHNHHNTMKLMAIIAERDAAYQERNLALAEKKAALAEREMAILQRDAAIHERNNAIVERDSAIAA 99 
                 99***99999****9**********99654311344556789********************************************************* PP

   GAGA_bind  84 lllvensla..salpvgvqvlsgtksidslqqlse.pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkek.kakkkkkksekskkk 177
                 l++ +++++  s +p   +v  gtk+ ++ q + + p++ d a   +re ++++a+pi++ ++ a + ++ k+++++++  ++ ka+k+++k +k  ++
  RWR85923.1 100 LEYSREKSMngSRTPYLPGVPCGTKHGHHPQLVPNpPHIVDAAPRhTREVHISDAFPISSIPDAAAKPRQAKRKETKAQLSSPmKASKPRRKDKKGAED 198
                 *997766555778888889999*********976668888888777**************999999988888655554433321333555555555555 PP

   GAGA_bind 178 vkkesad.er....................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255
                  +k+    ++                    +k+ +k +dl+ln+vs+Dest+PvPvCsCtG++rqCYkWGnGGWqSaCCttt+S yPLPv++++r+aRi
  RWR85923.1 199 LNKQVLGvKQlewkgqeltggedldkqlsvMKHGWKGQDLGLNQVSFDESTMPVPVCSCTGITRQCYKWGNGGWQSACCTTTLSLYPLPVMPDKRHARI 297
                 555554423367999************************************************************************************ PP

   GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 +grKmS++af+klL++LaaeG+dls pvDLkd WAkHGtn+++ti+
  RWR85923.1 298 GGRKMSGSAFTKLLSRLAAEGHDLSLPVDLKDRWAKHGTNRYITIK 343
                 *********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MDDSGQRENG RHRPDQYKGI HAQWTPLAHH QMKDHHNHHN TMKLMAIIAE RDAAYQERNL  60
ALAEKKAALA EREMAILQRD AAIHERNNAI VERDSAIAAL EYSREKSMNG SRTPYLPGVP  120
CGTKHGHHPQ LVPNPPHIVD AAPRHTREVH ISDAFPISSI PDAAAKPRQA KRKETKAQLS  180
SPMKASKPRR KDKKGAEDLN KQVLGVKQLE WKGQELTGGE DLDKQLSVMK HGWKGQDLGL  240
NQVSFDESTM PVPVCSCTGI TRQCYKWGNG GWQSACCTTT LSLYPLPVMP DKRHARIGGR  300
KMSGSAFTKL LSRLAAEGHD LSLPVDLKDR WAKHGTNRYI TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-101BBR-BPC family protein