PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85719.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 459aa    MW: 49390.7 Da    PI: 5.1829
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.58.3e-116874473374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lLl+cAeavs+++le+a+ lL ++sel+sp g++ +R+aayf+ AL++r+++s  ++y+ l+ ++ +  +s++  +a++ ++ +sP++kfsh+taNqa
  RWR85719.1  87 GLLLQCAEAVSTDNLEEATDLLPQISELSSPFGSSPERVAAYFADALHSRIVSSFLGVYSPLALKALALPQSQRISSAFQSYNSISPLIKFSHFTANQA 185
                 58*****************************************************************9999**************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLrvkp 198
                 I ea++ge+rvHiiD+di+qGlQWp L++ LasR+++  s+RiTgvgs    s  +l++tg+rL++fA++lg+pfef++l  k  +++d+ +  L+++ 
  RWR85719.1 186 IFEALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSVRITGVGS----SIVMLQATGKRLSDFATSLGLPFEFHPLEGKigNVSDV-TALLQTHA 279
                 ************************************************....9**************************95553355555.67789999 PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 +Ea++V+++   h l+d ++s       +L+++k+l+Pk+++vveq+++h ++sFl rf+eal+yysalfd+l  +++ +s er+ vE++++g ei+n+
  RWR85719.1 280 REAVVVHWMQ--HCLYDITGSDLG----TLRVLKTLRPKLITVVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGFGGDSLERHLVEQQVFGSEIRNI 371
                 *********9..778877787777....**********************.789********************************************* PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 va  g +r+ + + +e+W e l+++GF+ v+l+ + a+qa+lll +++++gy++ +e g+l lgWkd +L+++SaWr
  RWR85719.1 372 VAVGGPKRTGEVK-VENWGEELKKVGFEMVSLGGNPAAQASLLLGMFPWKGYTLVDEGGCLKLGWKDLSLLTASAWR 447
                 *******998887.9*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MLQSFLPQSP LNASPIPNPN STPSMKSKRS DRDSPSSSAA AAADDSGDHP RKRPATASGG  60
NSEAEAEEDE EEEGDRGGES TGLRLLGLLL QCAEAVSTDN LEEATDLLPQ ISELSSPFGS  120
SPERVAAYFA DALHSRIVSS FLGVYSPLAL KALALPQSQR ISSAFQSYNS ISPLIKFSHF  180
TANQAIFEAL DGEDRVHIID LDIMQGLQWP GLFHILASRS RKIRSVRITG VGSSIVMLQA  240
TGKRLSDFAT SLGLPFEFHP LEGKIGNVSD VTALLQTHAR EAVVVHWMQH CLYDITGSDL  300
GTLRVLKTLR PKLITVVEQD LSHGGSFLGR FVEALHYYSA LFDALGDGFG GDSLERHLVE  360
QQVFGSEIRN IVAVGGPKRT GEVKVENWGE ELKKVGFEMV SLGGNPAAQA SLLLGMFPWK  420
GYTLVDEGGC LKLGWKDLSL LTASAWRPSV DSATSSTPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-167GRAS family protein