PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85539.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 440aa MW: 45644.5 Da PI: 7.5779

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.7	1.4e-40	77	193	3	95
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqq++pai+++tgt++++a+++ ++s +ss+s+ s++ RWR85539.1 77 ATKRSSKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKTDGETIEWLLQQSEPAIIAATGTGTIPANFStLNVSLRSSGSSLSAPpsksaphtfhga 175 689*****************************************************************9998888888888855555665666777777 PP TCP 89 ...........kaaksaa 95 ++a++ RWR85539.1 176 lalapyavdaiSHAPFLG 193 777777777773333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MEPSNSCSNN NSSDKQTSSS DQRGGGGGGV ASGPSSSSQL VPFHHPSSSS GGGPSATALD 60 ASLAISTRPA DRKLAVATKR SSKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKTDGE 120 TIEWLLQQSE PAIIAATGTG TIPANFSTLN VSLRSSGSSL SAPPSKSAPH TFHGALALAP 180 YAVDAISHAP FLGFGHQQQP PQQAQHHLLL SADPIGDDSS ATYMRKSFRE DLFKEEHAPQ 240 SEGSAGNSSS PSSTKPMTTD LQLHHQQPSN VVPAAAAMWA VAAPAPTTGG AGAFWMLPVT 300 TGSSAPTMAT AAGPSEPSIW TFPSAGQYQT SIQAAGGGNP LQGPLHFMPR IEFQGGRVGT 360 MPLASMLLQQ PAAAVTVSAP QQHIGLGISD TNLGMLAALN AYGRGGLSMN FEQNQQLDHN 420 PVHQQQTANE SGEDRQTSSK

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MEPSNSCSNN NSSDKQTSSS DQRGGGGGGV ASGPSSSSQL VPFHHPSSSS GGGPSATALD  60
ASLAISTRPA DRKLAVATKR SSKDRHTKVD GRGRRIRMPA ACAARVFQLT RELGHKTDGE  120
TIEWLLQQSE PAIIAATGTG TIPANFSTLN VSLRSSGSSL SAPPSKSAPH TFHGALALAP  180
YAVDAISHAP FLGFGHQQQP PQQAQHHLLL SADPIGDDSS ATYMRKSFRE DLFKEEHAPQ  240
SEGSAGNSSS PSSTKPMTTD LQLHHQQPSN VVPAAAAMWA VAAPAPTTGG AGAFWMLPVT  300
TGSSAPTMAT AAGPSEPSIW TFPSAGQYQT SIQAAGGGNP LQGPLHFMPR IEFQGGRVGT  360
MPLASMLLQQ PAAAVTVSAP QQHIGLGISD TNLGMLAALN AYGRGGLSMN FEQNQQLDHN  420
PVHQQQTANE SGEDRQTSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-49	TCP family protein