PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85516.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 270aa MW: 30200.3 Da PI: 10.2208

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.5e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G + W++++++mg ++R +k+c +rw +yl RWR85516.1 4 RQRWQPEEDALLRAYVKQYGAKEWNLVSQRMGkpLHRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	36	1.6e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + RWR85516.1 59 KGSLTPEEQTLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MKERQRWQPE EDALLRAYVK QYGAKEWNLV SQRMGKPLHR DAKSCLERWK NYLKPGIKKG 60 SLTPEEQTLV ISLQAKYGNK WKKIASEVPG RTAKRLGKWW EVFKEKQLKD NNNSNNHRNQ 120 HQHHDQGHPI LLSSSSDSVH SQYDHILQTF AEKYVQPNLP PHHPMGALAA DAPPILSLAR 180 PAEIPPPPSS STSSLPPWLS SSVSTSSSST ASPSVSLTLS PTEPAGEMGV GVGRMIVPVQ 240 QAAALVQCCK EVEEGRQTWV QQKKERRRGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	3e-62	MYB family protein