PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84986.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 534aa MW: 58600.6 Da PI: 6.6333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.9e-09	366	414	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RWR84986.1 366 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 414 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MGSSEKEKFV IEKSGDALNY PSSSISLDWR FGGGNLTSPS HLVPPENYSA SSSLSTAMVD 60 SFSSTVWDHP SSQNLGFCSN NIQTSASTSK VIAPRNTSPD SLRSEDMEKL VSVGWNNPNL 120 IPRCGGFLQS GAGLLPHSLS QVPMDSAFIE RAARLSCFGD FSNMTNPFSI SESFNHYTKN 180 GVVQSLQTLH VQSSSGLNVS GEQFQKNDSR MAEVVKDGVP VNHDAMEDRL QKNGGETGGF 240 YRPSDEGKHG IGDPCNGSEE AEFSGSAQEE LSVMEKVVGE PLAQALSVKK RKRSNKDVEL 300 EQGKGSPQLS VETVKENDVT KEKGEQNVTS VMTTTSKKHS KDSYQNSDAP KQDYIHVRAR 360 RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL 420 SMKLATVNPQ LDFNIEELLS KDIFQLHGRT PSTLGFLPNM GITHPQLHPF QQGLVQAGIP 480 SIGNDSDMLR RTISSPLTTL NGYKEPPLHQ RGPLFEVRFY SILVTSVLLS PSQQ

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MGSSEKEKFV IEKSGDALNY PSSSISLDWR FGGGNLTSPS HLVPPENYSA SSSLSTAMVD  60
SFSSTVWDHP SSQNLGFCSN NIQTSASTSK VIAPRNTSPD SLRSEDMEKL VSVGWNNPNL  120
IPRCGGFLQS GAGLLPHSLS QVPMDSAFIE RAARLSCFGD FSNMTNPFSI SESFNHYTKN  180
GVVQSLQTLH VQSSSGLNVS GEQFQKNDSR MAEVVKDGVP VNHDAMEDRL QKNGGETGGF  240
YRPSDEGKHG IGDPCNGSEE AEFSGSAQEE LSVMEKVVGE PLAQALSVKK RKRSNKDVEL  300
EQGKGSPQLS VETVKENDVT KEKGEQNVTS VMTTTSKKHS KDSYQNSDAP KQDYIHVRAR  360
RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL  420
SMKLATVNPQ LDFNIEELLS KDIFQLHGRT PSTLGFLPNM GITHPQLHPF QQGLVQAGIP  480
SIGNDSDMLR RTISSPLTTL NGYKEPPLHQ RGPLFEVRFY SILVTSVLLS PSQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	294	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	8e-95	bHLH family protein