PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR84753.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 330aa    MW: 37711 Da    PI: 9.6295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR84753.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-181661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
       RWR84753.1 16 RGHWRPAEDEKLRQLVEQFGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 61
                     899*****************************.***********996 PP
2Myb_DNA-binding59.66.7e-1968111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
       RWR84753.1  68 RRPFTPEEEERLLTAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 111
                      679*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MEESKTSSDD TKTCPRGHWR PAEDEKLRQL VEQFGPQNWN SIAEKLQGRS GKSCRLRWFN  60
QLDPRINRRP FTPEEEERLL TAHRIHGNKW ALIARLFPGR TDNAVKNHWH VIMARRHRER  120
SRLFEKRSYQ HPLLSSTETN INGLHPRYIT PKEENNSIKQ FQFDTTNFFD FQSHGKDGAF  180
SISPSTSSFP SWAFDAPTSS TMTPSWDFLK GVRTDHFGAN PNVCVLESCH GSNQPLRGNY  240
FNSSMYNGFR NLGTQGIPIY NRNASNPVGF SSRGDGCVSE EKAKIDFARF GDKPTTAPKI  300
RVNSEQEHGD ETMKNKNVPF IDFLGVGISS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-67MYB family protein