PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84628.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 732aa MW: 81806.5 Da PI: 5.0257

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.7e-06	115	137	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G C GdrC+F+Hgp RWR84628.1 115 VPCFYFQK-GLCLKGDRCPFMHGP 137 57778888.*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MDPNHHPPET SEEEALKRRN TDCVYFLASP LTCKKGNDCE YRHSEGARMN PRDCWYWLNG 60 NCLNPKCAFR HPPLEGLLAT TGATAGSSVA SQTAASTQTP AAHPTAAHNP SKQSVPCFYF 120 QKGLCLKGDR CPFMHGPQPV LNPSPQQTSK VAASVTELQI IKKATGVLGK CTSQQKPVEM 180 PPIVNPVINV EVASNNVIAA KKTMRPAAVY DDLPKTKPSN VPLIGGNGAT GPHEYDHQAL 240 PPDEHLQNGR EAGEFLGESS PGFDVLVDDE IQDSDYFQHE DEYGLGASNG GRHLNSINEF 300 DYEHSSELDS LAKFDREPYN EYRDYDQYRR PHDQFGWEHN KTSSKRILEQ SSITERRRQR 360 EESPDQIDRS DLRHRLSKQR KVKGSRSASS PDRHIEINHR GDRYGEEQRY RGHHRDPRHV 420 LPETSRSNRL QGRIMLPGRS SPEKANNLRP DREMDRGRNS GRSSPSRPVL YQARHHDRVR 480 QTQENNFTTE VRNFRAQPIK RDEIGILNFA GPKSLAELKG SKASDSREEQ STKNDAFAFK 540 SQLVREPKTM KSGKAVGHLE PEGLISFEGP KPLREILKRK RETASGSGKV SSDGEDSGRS 600 EIAATETPIT RVFDSKKEAG VNAGAVTAEE NDDSDEDGLV ATEGYELTHE DPTSAEKGDA 660 LEMDGMTIDT MEDQELDETY DQRDGESDYE TVEGGDFKAE DENAEPEDDY LDEDDDDDEE 720 DDFSSKIGAM LS

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MDPNHHPPET SEEEALKRRN TDCVYFLASP LTCKKGNDCE YRHSEGARMN PRDCWYWLNG  60
NCLNPKCAFR HPPLEGLLAT TGATAGSSVA SQTAASTQTP AAHPTAAHNP SKQSVPCFYF  120
QKGLCLKGDR CPFMHGPQPV LNPSPQQTSK VAASVTELQI IKKATGVLGK CTSQQKPVEM  180
PPIVNPVINV EVASNNVIAA KKTMRPAAVY DDLPKTKPSN VPLIGGNGAT GPHEYDHQAL  240
PPDEHLQNGR EAGEFLGESS PGFDVLVDDE IQDSDYFQHE DEYGLGASNG GRHLNSINEF  300
DYEHSSELDS LAKFDREPYN EYRDYDQYRR PHDQFGWEHN KTSSKRILEQ SSITERRRQR  360
EESPDQIDRS DLRHRLSKQR KVKGSRSASS PDRHIEINHR GDRYGEEQRY RGHHRDPRHV  420
LPETSRSNRL QGRIMLPGRS SPEKANNLRP DREMDRGRNS GRSSPSRPVL YQARHHDRVR  480
QTQENNFTTE VRNFRAQPIK RDEIGILNFA GPKSLAELKG SKASDSREEQ STKNDAFAFK  540
SQLVREPKTM KSGKAVGHLE PEGLISFEGP KPLREILKRK RETASGSGKV SSDGEDSGRS  600
EIAATETPIT RVFDSKKEAG VNAGAVTAEE NDDSDEDGLV ATEGYELTHE DPTSAEKGDA  660
LEMDGMTIDT MEDQELDETY DQRDGESDYE TVEGGDFKAE DENAEPEDDY LDEDDDDDEE  720
DDFSSKIGAM LS