PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84612.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 471aa MW: 51609.6 Da PI: 9.4151

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H RWR84612.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.9	0.00034	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWR84612.1 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVRRKVYLCP EPTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESARL PSVLNTMGSH LHGNSNMTLS LPQLGSQFSL MQDQNHPSTN 180 LLRLGSASGA QFDQLISPSN QSSFHPPQST PSSSFFLHSS NQNFNEPQPH QSLLQSKPFH 240 GLMQLPDLQG NNTNNSSSVN LLNLSFFSNS ATTSSINSNN SNSNPHPSGL LIPDQLSNMM 300 NTQMGSGTSS LYNPSFQNDS VLPQMSATAL LQKAAQMGAT TSSTNISLLR GFSSSSANTA 360 KDDRSQHMQT HFQGSFGSGG DESLRSQVEN ETHLQNLIMN SLPNGFGALD RNLCNMGGSD 420 GLTRDFLGVG GMVRGMSRTI SQREQHLGIG SLGSGMNAAD VNRCLGGGNL Q

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVRRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARL PSVLNTMGSH LHGNSNMTLS LPQLGSQFSL MQDQNHPSTN  180
LLRLGSASGA QFDQLISPSN QSSFHPPQST PSSSFFLHSS NQNFNEPQPH QSLLQSKPFH  240
GLMQLPDLQG NNTNNSSSVN LLNLSFFSNS ATTSSINSNN SNSNPHPSGL LIPDQLSNMM  300
NTQMGSGTSS LYNPSFQNDS VLPQMSATAL LQKAAQMGAT TSSTNISLLR GFSSSSANTA  360
KDDRSQHMQT HFQGSFGSGG DESLRSQVEN ETHLQNLIMN SLPNGFGALD RNLCNMGGSD  420
GLTRDFLGVG GMVRGMSRTI SQREQHLGIG SLGSGMNAAD VNRCLGGGNL Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-102	C2H2 family protein