PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR84021.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 320aa    MW: 35800.2 Da    PI: 5.4815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR84021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W+ +++  g++R+ k+c++rw +yl
       RWR84021.1 14 KGPWTPEEDIMLVSYIQEHGPGNWRFVPANTGLNRCSKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.23e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++Tt E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       RWR84021.1  67 RGNFTTKEEKLIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRPPCCDKV GTKKGPWTPE EDIMLVSYIQ EHGPGNWRFV PANTGLNRCS KSCRLRWANY  60
LRPGIKRGNF TTKEEKLIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKSLQ  120
TGLKGEISNG FPSSQPNSKG QWERSLQTDI HKARKALCEA LSLEKPDYIS DFNISPNQEP  180
SYVWSMENVS RLLQGWMGNS PKPSRTSSEA TPNSSNHEVG ADSISSEGSQ GSTNDDIMSP  240
EALELLLNLD SSMPDASEPI SLEKKEKCTL DLDLLQSESK QNLESEFPLS MFEKWFLDES  300
AAQEANGMMD ISLADTNLSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-101MYB family protein