PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83987.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 536aa    MW: 59665 Da    PI: 6.5041
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.41.1e-1061775312374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +l+lecA a+s ++l +a+++L +l + asp+g +  +R++ayf++A+a+r+++s+ +l++ l +++t        +aa+++f+++sP++kf+h+t N
  RWR83987.1 177 LTLMLECAVAISVENLVEANRMLLELTQVASPYGpSCAERVVAYFAKAMASRVMNSWLGLCSPLITQKT-------IFAAFQVFNNISPFIKFAHFTSN 268
                 5789******************************9999***********************87766665.......6899******************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+g     s + leetg++L++fA++lg++fef++ +ak+  d+++++++  +
  RWR83987.1 269 QAILEAFHQRNRVHIIDLDIMQGLQWPALFHILATRIEGPPHIRMTGMGT----SIDLLEETGRQLSSFAKRLGLSFEFHP-IAKKSGDIDISMIQRWR 362
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE++aV+++   h+l+d +++  +    +++l+ +l P+v+++v+q++  n +sFl+rf+ +l+yys++fdsl a+l +++ +r+ vE+ l+grei n+
  RWR83987.1 363 GETVAVHWMQ--HSLYDATGPDCK----TMRLLEQLAPRVITLVQQDVP-NVGSFLDRFVGSLHYYSTIFDSLGASLLHDDPNRHCVEHCLFGREINNI 454
                 *********9..999999998888....*******************96.699********************************************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +a  g +r   +e++++Wr  l +  F++vp+s + ++qa+l+l+++  s+gy++ + +g+l lgWk+ +L+++SaW+
  RWR83987.1 455 LAIGGPAR-SGEEKFNNWRVELARHCFTQVPVSGNSMAQAQLILNMFLpSHGYTILQGDGTLRLGWKGTSLYTASAWT 531
                 ******95.55678*********************************99****************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MACKHLKKAT PCPLLLPPSH FYEKIIETQE KNTMMKGEFE VHGALDFIQT HEQWDSSPIG  60
FSMAHHGHGN VNPPARPSAD ARYSNMERFE LSEWMEQVVK HLSETSSDTE GLPIDTLSVD  120
NFACTIGDWR PRKSAGRMYG GGVCGDGSEE EPHLCGVAGN QANNSESRID EHGLGLLTLM  180
LECAVAISVE NLVEANRMLL ELTQVASPYG PSCAERVVAY FAKAMASRVM NSWLGLCSPL  240
ITQKTIFAAF QVFNNISPFI KFAHFTSNQA ILEAFHQRNR VHIIDLDIMQ GLQWPALFHI  300
LATRIEGPPH IRMTGMGTSI DLLEETGRQL SSFAKRLGLS FEFHPIAKKS GDIDISMIQR  360
WRGETVAVHW MQHSLYDATG PDCKTMRLLE QLAPRVITLV QQDVPNVGSF LDRFVGSLHY  420
YSTIFDSLGA SLLHDDPNRH CVEHCLFGRE INNILAIGGP ARSGEEKFNN WRVELARHCF  480
TQVPVSGNSM AQAQLILNMF LPSHGYTILQ GDGTLRLGWK GTSLYTASAW TSNALQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-141GRAS family protein