PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83624.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 496aa MW: 54308.2 Da PI: 4.9795

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.2e-11	312	354	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L RWR83624.1 312 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 354 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MLSRVNGSVW MGGGGEEEDA VSWTRNNENQ DEMGLSTFKS MLEDDWYVNS SSNPPQHDFQ 60 TLQTHQEIND IAFSSNSNGE NLFLQPLDPP QISSSFLPPK NCFSSLNVSC ENPLNPGFDL 120 GCDAGFPASN STSPVLMNRE SCGVLPGFGG LGSNGKMGMP NFGQESQFTN THLLPLPETT 180 GFNSPSFGGF EGSSRNALFM NRPKALRPLE VLPPLGAQPT LFQKRAALRQ NSAEKAGNLG 240 CFGAKVQEPE KSKWINDEDE LEELSIDGSG LNYDSDDVIE NQNKEGEENA NSVVTGGDQK 300 GKKKGPPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRINE 360 LHTELESPPS SSALPATASF PPLTPTLPTL PCRVKEELCP SSLMSPNSQP ARVEVRVREG 420 KAVNIHMFCA RRPGLLLSTM RALDNLGLDI QQAVISCFNG FALDVFRAEQ CNEGPHILPE 480 DIKAVLLHST GFHLTM

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MLSRVNGSVW MGGGGEEEDA VSWTRNNENQ DEMGLSTFKS MLEDDWYVNS SSNPPQHDFQ  60
TLQTHQEIND IAFSSNSNGE NLFLQPLDPP QISSSFLPPK NCFSSLNVSC ENPLNPGFDL  120
GCDAGFPASN STSPVLMNRE SCGVLPGFGG LGSNGKMGMP NFGQESQFTN THLLPLPETT  180
GFNSPSFGGF EGSSRNALFM NRPKALRPLE VLPPLGAQPT LFQKRAALRQ NSAEKAGNLG  240
CFGAKVQEPE KSKWINDEDE LEELSIDGSG LNYDSDDVIE NQNKEGEENA NSVVTGGDQK  300
GKKKGPPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRINE  360
LHTELESPPS SSALPATASF PPLTPTLPTL PCRVKEELCP SSLMSPNSQP ARVEVRVREG  420
KAVNIHMFCA RRPGLLLSTM RALDNLGLDI QQAVISCFNG FALDVFRAEQ CNEGPHILPE  480
DIKAVLLHST GFHLTM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	320	KKKGPPAKNLMAERRRRKK
2	314	321	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-127	bHLH family protein