PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83122.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 1047aa MW: 113828 Da PI: 5.1494

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83122.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	48	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l RWR83122.1 48 KGQWTAEEDALLCRAVQRFKGKNWKKIAEYFT-DRTDVQCLHRWQKVL 94 799**************************9.**********986 PP
2	Myb_DNA-binding	56.7	5.7e-18	100	146	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l +++v ++G++ W+tIa+ ++ gR +kqc++rw+++l RWR83122.1 100 KGPWSKEEDDLMIELVGKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 146 79****************************.***********97 PP
3	Myb_DNA-binding	48.1	2.7e-15	152	194	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ RWR83122.1 152 KEAWTQEEELALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 194 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence
MESEKTGNSR TGDTAAAAAA FLDGSGNAFQ KSRPLHGRTT GPTRRSTKGQ WTAEEDALLC 60 RAVQRFKGKN WKKIAEYFTD RTDVQCLHRW QKVLNPELVK GPWSKEEDDL MIELVGKYGP 120 KKWSTIAQAL PGRIGKQCRE RWHNHLNPSI NKEAWTQEEE LALIHAHQIY GNKWAELTKF 180 LPGRTDNAIK NHWNSSVKKK LDSYLASGLL AQFQGLPHVE NSNLPNSSSS ARNQQNSGDG 240 SFKDIAEIGD ISESSQGSVP VGCSQSDCEV ANKISECVLE EFNRREEAVQ RNTQNSSSLL 300 GCKQHSDSTN EGTCAVIEMP CSLAISSPAQ NLLNEEGEYG NKACQLNPYE LHPAKALLDP 360 VHESTTLQEA SKCHNSGVGK NPDTESIHVH GTLESLAPLG CTVDDGLVFG GDYWKNMLSE 420 AAISDGFSFG NGVEGSSVVD LDECAGSPIY HSDIQGFDWV KSLASSSHLY HLPRSSDSLG 480 TSCCQNLLTV VSPSFLYPGD DKGVVRSETT EVGNISSGTE DLDLITCSSG GLLCPNGPIS 540 SPCGSDSAKV CISVDSAQKN DSPKSVPMEI FSSETMDIVG SLPFIYGSAD GPTEHPDSGA 600 LFYEPPTFPS LEIPFFSCDL VPSGGEAYSP FGIRQLMTSS MNCYTHSLWD SPVNDYSPDA 660 VLKSAAKSFM CTPSILKKRQ RDLSPLQEKK SEKKPGKGMN HGSFSISSSL NQSDYPFPDN 720 IVDENGACEA TRPALERIPS PTYLEEKFVA SPKSKESLNH ASSGGKGVMF PDGRYPGPGL 780 SDKRNHQDDI MYINAGFDAK TKIESDILLQ KVSPPSGVLV EHNMNEMMFV SPPGKYPLDK 840 PLKGHSESSI GDQCFSCFLS SSVGRKKQER RLFSNSQQVT FEKGGLSNSA DIENLRPFGD 900 TPGIKKGIES PSAWKSPWFM NSLLPGQRFD TDMTYEDIGY LLSPGDGAYD ALGLMRQLKD 960 YTATAMAEAQ EVLASDAPQN SQFPDNELEN LIPLPPGALP FQTERRILDF SGCGTPGKDT 1020 ENRKTPGIGT STTGFSSPSS YLMKCCR

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence

MESEKTGNSR TGDTAAAAAA FLDGSGNAFQ KSRPLHGRTT GPTRRSTKGQ WTAEEDALLC  60
RAVQRFKGKN WKKIAEYFTD RTDVQCLHRW QKVLNPELVK GPWSKEEDDL MIELVGKYGP  120
KKWSTIAQAL PGRIGKQCRE RWHNHLNPSI NKEAWTQEEE LALIHAHQIY GNKWAELTKF  180
LPGRTDNAIK NHWNSSVKKK LDSYLASGLL AQFQGLPHVE NSNLPNSSSS ARNQQNSGDG  240
SFKDIAEIGD ISESSQGSVP VGCSQSDCEV ANKISECVLE EFNRREEAVQ RNTQNSSSLL  300
GCKQHSDSTN EGTCAVIEMP CSLAISSPAQ NLLNEEGEYG NKACQLNPYE LHPAKALLDP  360
VHESTTLQEA SKCHNSGVGK NPDTESIHVH GTLESLAPLG CTVDDGLVFG GDYWKNMLSE  420
AAISDGFSFG NGVEGSSVVD LDECAGSPIY HSDIQGFDWV KSLASSSHLY HLPRSSDSLG  480
TSCCQNLLTV VSPSFLYPGD DKGVVRSETT EVGNISSGTE DLDLITCSSG GLLCPNGPIS  540
SPCGSDSAKV CISVDSAQKN DSPKSVPMEI FSSETMDIVG SLPFIYGSAD GPTEHPDSGA  600
LFYEPPTFPS LEIPFFSCDL VPSGGEAYSP FGIRQLMTSS MNCYTHSLWD SPVNDYSPDA  660
VLKSAAKSFM CTPSILKKRQ RDLSPLQEKK SEKKPGKGMN HGSFSISSSL NQSDYPFPDN  720
IVDENGACEA TRPALERIPS PTYLEEKFVA SPKSKESLNH ASSGGKGVMF PDGRYPGPGL  780
SDKRNHQDDI MYINAGFDAK TKIESDILLQ KVSPPSGVLV EHNMNEMMFV SPPGKYPLDK  840
PLKGHSESSI GDQCFSCFLS SSVGRKKQER RLFSNSQQVT FEKGGLSNSA DIENLRPFGD  900
TPGIKKGIES PSAWKSPWFM NSLLPGQRFD TDMTYEDIGY LLSPGDGAYD ALGLMRQLKD  960
YTATAMAEAQ EVLASDAPQN SQFPDNELEN LIPLPPGALP FQTERRILDF SGCGTPGKDT  1020
ENRKTPGIGT STTGFSSPSS YLMKCCR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	692	698	EKKPGKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-107	MYB family protein