PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82963.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-other

Protein Properties

Length: 693aa MW: 76964.4 Da PI: 4.617

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.6	6.7e-11	617	654	18	54
HHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek.nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F k n yp++e++e L+k+lg+t rq++ WF N R RWR82963.1 617 EFLKvNAYPTRETKESLSKELGITVRQISKWFENARRS 654 35555*****************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MDIASSSLES CQARKETKHE DDSDSMYSGS GEFIPVQVDF FYTVQLRISP EDVTNACDLQ 60 RYETVQVDVI NTSKSTRREK RTSSNLVSSK YVLRSSLEGA RGLRSETVGA CETAHTCIDA 120 VHASTERRNN RQRGKETKKV LRDEFFSLRK RFRYLLTRMS YEQSLIDAYS GEGWKGQSIE 180 KIRPKKELQR ATSEILRCKL EVRELVKHLD ALCAEGKLQA SLFDSQGQGH INCEDIFCAK 240 CGLKDSSTNN DIILCDVPPG DEIWLCPGCK CKVYCFDLLN DVQGTQLSIL DKWEKVFPET 300 AGDKQGVDYG ESDDSEDSDY DPDGGEHNEE VLKECSSSEE SDFTSASDGS NNSAKDEQHE 360 GLGFSSDDSE DNDFDPSGLD IDKMVHHEGS SSNESDFSSD SDDLSALGDV NVPADSDKDP 420 LSLSVGCSEP VSSSCKGRLD TVIKEKESSM DSEQLSMQER DLNGKVVLPV SRKRHQEHLD 480 YKKLYDEAYG NTTSDSSEDE DWTEINTPKK VKNDDSENNN VMSLDGNTKT VQGMENFKVP 540 KRMHQKIYIS PEQNKDQVGG TGNTSSRTID QKLESEGTNH SGAKPLEDSR KPDSVGNKAT 600 TSGSRCFGKV ISQKLYEFLK VNAYPTRETK ESLSKELGIT VRQISKWFEN ARRSLRLSSA 660 DKEGNQVEKG TTNNDPVLAE ANGLDPDSKN GGG

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MDIASSSLES CQARKETKHE DDSDSMYSGS GEFIPVQVDF FYTVQLRISP EDVTNACDLQ  60
RYETVQVDVI NTSKSTRREK RTSSNLVSSK YVLRSSLEGA RGLRSETVGA CETAHTCIDA  120
VHASTERRNN RQRGKETKKV LRDEFFSLRK RFRYLLTRMS YEQSLIDAYS GEGWKGQSIE  180
KIRPKKELQR ATSEILRCKL EVRELVKHLD ALCAEGKLQA SLFDSQGQGH INCEDIFCAK  240
CGLKDSSTNN DIILCDVPPG DEIWLCPGCK CKVYCFDLLN DVQGTQLSIL DKWEKVFPET  300
AGDKQGVDYG ESDDSEDSDY DPDGGEHNEE VLKECSSSEE SDFTSASDGS NNSAKDEQHE  360
GLGFSSDDSE DNDFDPSGLD IDKMVHHEGS SSNESDFSSD SDDLSALGDV NVPADSDKDP  420
LSLSVGCSEP VSSSCKGRLD TVIKEKESSM DSEQLSMQER DLNGKVVLPV SRKRHQEHLD  480
YKKLYDEAYG NTTSDSSEDE DWTEINTPKK VKNDDSENNN VMSLDGNTKT VQGMENFKVP  540
KRMHQKIYIS PEQNKDQVGG TGNTSSRTID QKLESEGTNH SGAKPLEDSR KPDSVGNKAT  600
TSGSRCFGKV ISQKLYEFLK VNAYPTRETK ESLSKELGIT VRQISKWFEN ARRSLRLSSA  660
DKEGNQVEKG TTNNDPVLAE ANGLDPDSKN GGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-63	HB-PHD family protein