PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82898.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 362aa MW: 40467.5 Da PI: 5.0438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.1e-11	186	232	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +lP + kK +Ka+iL A++++k+Lq RWR82898.1 186 DHIIAERKRREKLSQRFIALSAVLPCL-----KKTDKASILGDAIKFVKQLQ 232 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MEISPVRLLS ELEMEDPIFI DQCELNILDQ FTTQQMEDAF GEEFLHSFTP ESYSSYPPIT 60 PGSNNTFSCS SMEASPTSET ERPTKQMRTG SWNASTTNQF SAADASSPTI ISFCQPNSPS 120 NYQQFYGESF KLDDKGISPT RTSTIPSDNL ISQGSFNKQS YVSKGASQAS KRVRVASTKP 180 PSYAQDHIIA ERKRREKLSQ RFIALSAVLP CLKKTDKASI LGDAIKFVKQ LQERVKTLEE 240 ETAKKTMESV VFVKKSQIYD EDNLSSSYEN VDSHSNESLP EIEVRVYDQN ILIRIHCNKQ 300 KGLLVKTLAE IEKFQLSVIN TNVMPFSSSA LDITVIAQME EGFNMTPKDL GTNLSSALSK 360 FT

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MEISPVRLLS ELEMEDPIFI DQCELNILDQ FTTQQMEDAF GEEFLHSFTP ESYSSYPPIT  60
PGSNNTFSCS SMEASPTSET ERPTKQMRTG SWNASTTNQF SAADASSPTI ISFCQPNSPS  120
NYQQFYGESF KLDDKGISPT RTSTIPSDNL ISQGSFNKQS YVSKGASQAS KRVRVASTKP  180
PSYAQDHIIA ERKRREKLSQ RFIALSAVLP CLKKTDKASI LGDAIKFVKQ LQERVKTLEE  240
ETAKKTMESV VFVKKSQIYD EDNLSSSYEN VDSHSNESLP EIEVRVYDQN ILIRIHCNKQ  300
KGLLVKTLAE IEKFQLSVIN TNVMPFSSSA LDITVIAQME EGFNMTPKDL GTNLSSALSK  360
FT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	196	ERKRRE
2	192	197	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	8e-60	bHLH family protein