PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82096.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

RAV

Protein Properties

Length: 351aa MW: 38980.8 Da PI: 8.9952

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.2	9.6e-14	62	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a++k++g RWR82096.1 62 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQKFRG 110 78**9888.8*****3.....5******99***********98 PP
2	B3	100.3	1.1e-31	189	286	1	94
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae++ g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F+++ +++l++ RWR82096.1 189 FDKAVTPSDVGKLNRLVIPKQHAEKNfplqiGSD-CKGVLLNFEDAQGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVSFQRSTGVDKQLYI 286 89************************997555.5889***********************************************77555555665 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MDSCCIDEAS SETISVPATP SPAPSKQQPS KGLQRAGSGA STVIDSALES GVEADSRKLP 60 SSQYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAAKA YDIAAQKFRG RDAVTNFKPL 120 SETDDQDETQ FLNSHSKPEI VDMLRKHTYN DELQQSIRHH AAGEDGGMKG NKGGLLDMNG 180 GEKSREQLFD KAVTPSDVGK LNRLVIPKQH AEKNFPLQIG SDCKGVLLNF EDAQGKVWRF 240 RYSYWNSSQS YVLTKGWSRF VKEKGLKAGD VVSFQRSTGV DKQLYIDWKV RTGVEPVQTP 300 VQVLRLFGVN IVKIPVVNAM ADGDWNGKRG REIGMGKEKL LRRWGSMDAH P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MDSCCIDEAS SETISVPATP SPAPSKQQPS KGLQRAGSGA STVIDSALES GVEADSRKLP  60
SSQYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAAKA YDIAAQKFRG RDAVTNFKPL  120
SETDDQDETQ FLNSHSKPEI VDMLRKHTYN DELQQSIRHH AAGEDGGMKG NKGGLLDMNG  180
GEKSREQLFD KAVTPSDVGK LNRLVIPKQH AEKNFPLQIG SDCKGVLLNF EDAQGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKGLKAGD VVSFQRSTGV DKQLYIDWKV RTGVEPVQTP  300
VQVLRLFGVN IVKIPVVNAM ADGDWNGKRG REIGMGKEKL LRRWGSMDAH P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-135	RAV family protein