PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82092.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 275aa MW: 30719.3 Da PI: 7.1491

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	105	124	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ RWR82092.1 105 FPCFVCHKTFNRYNNMQMHM 124 89*****************9 PP
2	zf-C2H2	18.1	7.4e-06	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F + + ++H +++ RWR82092.1 190 FVCHKCGKAFAVRGDWRTHEKNC 212 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MHSPSFSFSG AANEDEESIL LTLCPPGQQK YPSSSSSSSS FHEQTKHISP PLENCLNDDG 60 NVTIALHIGP PGTAVGVTNP NNVATAEGQY WIPSPAQIMV GPTQFPCFVC HKTFNRYNNM 120 QMHMWGHGSE YRKGPESLRG ALPSSTMLRI PCYCCAQGCK NNIDHPRSKP LKDFRTLQTH 180 YKRKHGAKPF VCHKCGKAFA VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHVRAFGDG 240 HAPHGFESCD DDDDDNDDDI YEDEHGNAGC FFHHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-117	C2H2 family protein