PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81815.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 471aa MW: 51726 Da PI: 6.1548

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.5	1.4e-39	108	260	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssasec.....ea 75 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk+++WL+q+a ai el+++ + + RWR81815.1 108 GGKDRHSKVLTSKGLRDRRVRLSVPTAIQFYDLQDRLGCDQPSKAVDWLIQAAADAIAELPSLdgafqaspkqasnekryepdaE------IeranyLH 200 78*************************************************************99888765544444332211......12234445 PP TCP 76 esssssasnsssgkaaksaa.kskksqksaasalnlak.esrakarararertrekmrik 133 ++ + +++++++ +++++ +s++s++s+ s+l+l++ esr kar+rarert++++ ++ RWR81815.1 201 QHTQPQQQQQQQMLSSSKSGcSSNNSETSKGSVLSLSRsESRVKARERARERTAKEKEKE 260 55555555555555555555599999***********************998877665 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MLRSVNPKPA FFCIEEESDL GRDRQRKGDR YASGMEMEEM GMQARKRWRL GNGRDGGKLD 60 DNDDEDDGEA EEEEEEEEGG VGGVEKEEKG RVFTWNPSRI IRVSRGSGGK DRHSKVLTSK 120 GLRDRRVRLS VPTAIQFYDL QDRLGCDQPS KAVDWLIQAA ADAIAELPSL DGAFQASPKQ 180 ASNEKRYEPD AEIERANYLH QHTQPQQQQQ QQMLSSSKSG CSSNNSETSK GSVLSLSRSE 240 SRVKARERAR ERTAKEKEKE SNIPQSPNPS ASFTNLLTGC NGNTSVATIP IPTAATHNSN 300 PSFNPKQFLQ YFPSMDYFGP AVIFGDGKPH QSSSFSTQAH FGNPTVSSLP PNIMASTAGD 360 HPELQQFALW QDHVIPVAAA ASTENDHNLN FSISSSLTGF NRGTLQSNSP SSLFPHLQKF 420 PAPVVEAPPN VPFFIGTAAD NQFLSAFDGR LQLCYGDGCS RHSDLKGKGK S

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MLRSVNPKPA FFCIEEESDL GRDRQRKGDR YASGMEMEEM GMQARKRWRL GNGRDGGKLD  60
DNDDEDDGEA EEEEEEEEGG VGGVEKEEKG RVFTWNPSRI IRVSRGSGGK DRHSKVLTSK  120
GLRDRRVRLS VPTAIQFYDL QDRLGCDQPS KAVDWLIQAA ADAIAELPSL DGAFQASPKQ  180
ASNEKRYEPD AEIERANYLH QHTQPQQQQQ QQMLSSSKSG CSSNNSETSK GSVLSLSRSE  240
SRVKARERAR ERTAKEKEKE SNIPQSPNPS ASFTNLLTGC NGNTSVATIP IPTAATHNSN  300
PSFNPKQFLQ YFPSMDYFGP AVIFGDGKPH QSSSFSTQAH FGNPTVSSLP PNIMASTAGD  360
HPELQQFALW QDHVIPVAAA ASTENDHNLN FSISSSLTGF NRGTLQSNSP SSLFPHLQKF  420
PAPVVEAPPN VPFFIGTAAD NQFLSAFDGR LQLCYGDGCS RHSDLKGKGK S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	5e-37	TCP family protein