PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR81755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 340aa MW: 37498.6 Da PI: 9.9992 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 378.5 | 1.1e-115 | 1 | 340 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 mdd g+re r+k+ +y+ p+ ++k++ +++lms+iaerda+ +ern+a++ekkaa+aerdma lqrd+a+aern+a++erd+++ al++ RWR81755.1 1 MDDGGQREngRHKPdQYKgvhsqwtplgPH-QMKDHHTIKLMSIIAERDAAYQERNIAIAEKKAALAERDMAILQRDAAIAERNNAIIERDSAISALEY 98 99***99999************99987655.9******************************************************************9 PP GAGA_bind 87 vensla..salpvgvqvlsgtksidslqqlse.pqledsave.lreeeklealpieeaaeeakekkkkkkr..qrakkpkekkakkkkkksekskkkvk 179 ++++ + s ++ +v +gtk+ ++ +++ + +++d+a +re+ ++ea pi+ a e a + ++ k++ +a+ p + ka+k+++k++k ++ + RWR81755.1 99 ARENGMnsSGTACPPGVPRGTKHGHHPHHVAHaLHMGDTAPYhAREMPITEAIPISVASEAAAKPRRAKRKkdTKAQLPSSVKASKPRRKGKKGGEDLN 197 8887773433444557899*******99976668998876555************99888777766555440044555666677777777777777766 PP GAGA_bind 180 kesader.....................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257 k+ + + +k+e+k +dl+ln+vs+De+++PvPvCsCtG+++qCYkWGnGGWqSaCCttt+S+yPLP ++++r+aRi+g RWR81755.1 198 KQVSGAKqlewkghelmgcedlnkqlsvTKHEWKGQDLGLNQVSFDETSMPVPVCSCTGSSQQCYKWGNGGWQSACCTTTLSMYPLPLMPNKRHARIGG 296 666653358899*************************************************************************************** PP GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rKmS++af+klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+ RWR81755.1 297 RKMSGSAFTKLLSRLAAEGHDLSVPVDLKDHWAKHGTNRYITIK 340 *******************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence |
MDDGGQRENG RHKPDQYKGV HSQWTPLGPH QMKDHHTIKL MSIIAERDAA YQERNIAIAE 60 KKAALAERDM AILQRDAAIA ERNNAIIERD SAISALEYAR ENGMNSSGTA CPPGVPRGTK 120 HGHHPHHVAH ALHMGDTAPY HAREMPITEA IPISVASEAA AKPRRAKRKK DTKAQLPSSV 180 KASKPRRKGK KGGEDLNKQV SGAKQLEWKG HELMGCEDLN KQLSVTKHEW KGQDLGLNQV 240 SFDETSMPVP VCSCTGSSQQ CYKWGNGGWQ SACCTTTLSM YPLPLMPNKR HARIGGRKMS 300 GSAFTKLLSR LAAEGHDLSV PVDLKDHWAK HGTNRYITIK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 164 | 171 | RRAKRKKD |
2 | 167 | 191 | KRKKDTKAQLPSSVKASKPRRKGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-96 | BBR-BPC family protein |