PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80984.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 405aa MW: 44223.1 Da PI: 9.8958

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR80984.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	14.7	9e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k++ +s+ k H +++ RWR80984.1 144 FECEKCSKRYAVQSDWKAHTKNC 166 89*****************9987 PP
3	zf-C2H2	12.4	0.00047	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++F+rk+++++H + RWR80984.1 174 DCGTTFTRKDSFNTHRAFC 192 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MSNSTSPSED ASLSSGTKVQ DFPTSVTAIS PPPPQDRTTK KKRKQPGNPD PDAEVVALSP 60 KTLTTTNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKDVRKRVYV CPEPSCSHHH 120 PSKALGDLTG IKKHYCRKHG EKIFECEKCS KRYAVQSDWK AHTKNCGTKE YKCDCGTTFT 180 RKDSFNTHRA FCDALAQETE RLTSLARDPP PHQLPQNPPN PSPLFSYSQP PTLFPIQTTA 240 PARIPSAPHI PWAPLQNSNP IIRSMGPHSS RLIASNSIFQ VPKHNPVPSG PSFYPQMGVT 300 HPTSAPNPPQ VLMPGAGNNY VMGNGSQGQG RVGPMHALGH MITPGLGAGN LGIWQKRESM 360 TRDFLGVAGE ATAAGVNAGD LLSVTGLNFA SDCDHPLRSG FGLWG

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MSNSTSPSED ASLSSGTKVQ DFPTSVTAIS PPPPQDRTTK KKRKQPGNPD PDAEVVALSP  60
KTLTTTNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKDVRKRVYV CPEPSCSHHH  120
PSKALGDLTG IKKHYCRKHG EKIFECEKCS KRYAVQSDWK AHTKNCGTKE YKCDCGTTFT  180
RKDSFNTHRA FCDALAQETE RLTSLARDPP PHQLPQNPPN PSPLFSYSQP PTLFPIQTTA  240
PARIPSAPHI PWAPLQNSNP IIRSMGPHSS RLIASNSIFQ VPKHNPVPSG PSFYPQMGVT  300
HPTSAPNPPQ VLMPGAGNNY VMGNGSQGQG RVGPMHALGH MITPGLGAGN LGIWQKRESM  360
TRDFLGVAGE ATAAGVNAGD LLSVTGLNFA SDCDHPLRSG FGLWG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-104	C2H2 family protein