PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80863.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

RAV

Protein Properties

Length: 422aa MW: 47186 Da PI: 6.8056

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45	2.6e-14	47	95	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r +lg+f t+eeAaka+++a +k++g RWR80863.1 47 SQYKGVVPQP-NGRWGAQIYEK-----HQRLWLGTFETEEEAAKAYDQAVLKFRG 95 78**9888.8*****3.....5**********************998 PP
2	B3	98.8	3.3e-31	134	237	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+kv tpsdv+k++rlv+pk++ae++ + ++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l+ RWR80863.1 134 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTVNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGEsGKDRLY 232 89*************************977788999***********************************************654666666777 PP EEEE- CS B3 94 vkvfr 98 + + r RWR80863.1 233 IDWKR 237 77666 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MDFLQGREGG EEEEEEEKQM MLLEEEMGKR PFQFYPTSSS SSPSPSSQYK GVVPQPNGRW 60 GAQIYEKHQR LWLGTFETEE EAAKAYDQAV LKFRGRDAVT NFSPHELVDL SSTTPEGDDS 120 GGSSRSSFER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSTVNEKG LLLNFEDRNG 180 KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFE RGVGESGKDR LYIDWKRRPD 240 AGQVSSTLPP FSLQHPLALQ RPVPWGRLFL PPAISMSMPP PQHLQQMNYS HRNYGGAYGY 300 NVVNPGGQVF YMRSQQMGGG VAQGGEDGSM GPPMVIDSVP IVQNKAAGKR LRLFGVNMDC 360 PASEGSDDGD AFRPGAMRIC PQPHPQPQPP LQLRPFHGAP LPAAPSELSR KGKQSLSLDL 420 DI

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MDFLQGREGG EEEEEEEKQM MLLEEEMGKR PFQFYPTSSS SSPSPSSQYK GVVPQPNGRW  60
GAQIYEKHQR LWLGTFETEE EAAKAYDQAV LKFRGRDAVT NFSPHELVDL SSTTPEGDDS  120
GGSSRSSFER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSTVNEKG LLLNFEDRNG  180
KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFE RGVGESGKDR LYIDWKRRPD  240
AGQVSSTLPP FSLQHPLALQ RPVPWGRLFL PPAISMSMPP PQHLQQMNYS HRNYGGAYGY  300
NVVNPGGQVF YMRSQQMGGG VAQGGEDGSM GPPMVIDSVP IVQNKAAGKR LRLFGVNMDC  360
PASEGSDDGD AFRPGAMRIC PQPHPQPQPP LQLRPFHGAP LPAAPSELSR KGKQSLSLDL  420
DI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	7e-78	RAV family protein