PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80859.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 770aa MW: 85288 Da PI: 6.8423

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	25	69	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ +++++ k++G W +I +++g ++t+ q++s+ qk+ RWR80859.1 25 RERWTEEEHNRFLEGLKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 69 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
METCSSGEDL ITTKIRKPYT ITKQRERWTE EEHNRFLEGL KLYGRAWQRI EEHIGTKTAV 60 QIRSHAQKFF SKLEKAALTK GVPLGQAHDI DIPPPRPKRK PSNPYPRKTA VTAPISSSVG 120 SKDGKPVAII SSLNPSKQVL DLENDPPAEE PPITTKFGRS KQSSDERSFS EVVNPLQEDL 180 CPSISSPSKN SLSESVALIN QCALREFMPS TEKHEQTSMD ESSVTVEFKR NQKLNKADDG 240 YNDHDIGGLK GLNLRNNSQA SNDKIVPREA SEDTKHQENP QKLPSNQNYP RHIPVHVVDE 300 KTEKPFSKMT DHITIGRQSG AQANPNHLKI HPSVSATGEH QMNTERSSIH HPFPIFHPPF 360 TQFHHDQDAY RSYTNISAIS SLIISTLLQN PAANAAASLA AGSWQFADYS FPDTHVGGFP 420 MKNIETHASL AAIAATTVAA ASAWWASQGL LPFCPPSQSG FIFAPAPTTT IPMTETIQVP 480 EDTKQRVDCI PQTPAQEDQQ VMDQEFSAAL KSRHSFKKAS SLFTSDSEES GDAKSCGLEQ 540 KVTGDLQPQS SIEFHGLKNG KTRKQLDRSS CGSNTPSGSE VEEDLVLEKH IEGKEEHKEA 600 ELSHITGEPI NRRFRSVGIG NLNDSWKEVS EEVVGRLAFQ ALFSRDVLPQ SFSPPHDLRN 660 KAHPQDDTEG KQNSSKNDDR DVLELELSSK TWAMNLDHPV CSEKDESSNN TDKLSMNGLV 720 GHGKLKARRT GFKPYKRCSV EAKESRVLNT GSQSEEKDAK RMRLQGEAAV

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

METCSSGEDL ITTKIRKPYT ITKQRERWTE EEHNRFLEGL KLYGRAWQRI EEHIGTKTAV  60
QIRSHAQKFF SKLEKAALTK GVPLGQAHDI DIPPPRPKRK PSNPYPRKTA VTAPISSSVG  120
SKDGKPVAII SSLNPSKQVL DLENDPPAEE PPITTKFGRS KQSSDERSFS EVVNPLQEDL  180
CPSISSPSKN SLSESVALIN QCALREFMPS TEKHEQTSMD ESSVTVEFKR NQKLNKADDG  240
YNDHDIGGLK GLNLRNNSQA SNDKIVPREA SEDTKHQENP QKLPSNQNYP RHIPVHVVDE  300
KTEKPFSKMT DHITIGRQSG AQANPNHLKI HPSVSATGEH QMNTERSSIH HPFPIFHPPF  360
TQFHHDQDAY RSYTNISAIS SLIISTLLQN PAANAAASLA AGSWQFADYS FPDTHVGGFP  420
MKNIETHASL AAIAATTVAA ASAWWASQGL LPFCPPSQSG FIFAPAPTTT IPMTETIQVP  480
EDTKQRVDCI PQTPAQEDQQ VMDQEFSAAL KSRHSFKKAS SLFTSDSEES GDAKSCGLEQ  540
KVTGDLQPQS SIEFHGLKNG KTRKQLDRSS CGSNTPSGSE VEEDLVLEKH IEGKEEHKEA  600
ELSHITGEPI NRRFRSVGIG NLNDSWKEVS EEVVGRLAFQ ALFSRDVLPQ SFSPPHDLRN  660
KAHPQDDTEG KQNSSKNDDR DVLELELSSK TWAMNLDHPV CSEKDESSNN TDKLSMNGLV  720
GHGKLKARRT GFKPYKRCSV EAKESRVLNT GSQSEEKDAK RMRLQGEAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	2e-42	MYB_related family protein