PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80781.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 278aa MW: 31421.8 Da PI: 9.7682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl RWR80781.1 14 KGPWTTKEDALLTKYIQAHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l RWR80781.1 67 RGNIGPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 677789**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRAPCCSKV GLHKGPWTTK EDALLTKYIQ AHGEGQWRSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI GPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLKTRG 120 ADQNDRNGLS KGVDLLKKKK KKKNNKKKNQ KESKCKDEVV RGETKVHLPK PIRLTSFTRN 180 FHVMEACNGN GNGNNSFGSG PSAHGVEVVK EDLGVSWHDC KGDGLLDDEV DHVLDFPSQS 240 HAPAKDGMLE KLYGEYLELL KEAEEKVQLD SFDESLWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	143	KKKKKKK
2	137	148	KKKKKKKNNKKK
3	138	149	KKKKKKKNNKKK
4	139	150	KKKKKKKNNKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	6e-65	MYB family protein