PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR80741.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 483aa MW: 54712.1 Da PI: 8.2904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR80741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	236	259	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg+ F +++ L++H + H RWR80741.1 236 YICRVCGRKFHTNEKLVNHFKQlH 259 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MSSQPDPFYI KTSGSQIPTQ GFEKPGFRRL KKTSIIKPEE EEEEAATSGR MHSHSESATA 60 STVVGDRNTV LFLQISFFEF IPNCLCIGFV SFSFHIKKGR EEREHIGMVR YLRCVIPFQF 120 KSPSSHIHVF SLSRLFHYGL DGGFCHDPCS TKRTAENNVA IFWDLDNKPP SSFPPYDAAV 180 RLKLAASSFG AVRYMVAYAN RHAFSYVPPI VRDQRKERKA LDRLETKGAI KPAEPYICRV 240 CGRKFHTNEK LVNHFKQLHE REQIKRLNRL ESARGKQRVQ LAAKFSMKME KYKKAVNGVL 300 TPKVGYGLAD ELKRAGFWVR TVSDKPQAAD TALRNHMVDV MDRQCVGCLV LVSDDSDFVD 360 VLKEARLRCL RTVVVGDNND GALQRCADTG FSWTDIAAGK AKKEAVSVVG RWRDRDILKK 420 LEWTYKPEVE KCEYDPNESE VESENGDIED TISEGDSLAW KEDAGPWWEL ESDTEGTAAS 480 FKG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MSSQPDPFYI KTSGSQIPTQ GFEKPGFRRL KKTSIIKPEE EEEEAATSGR MHSHSESATA  60
STVVGDRNTV LFLQISFFEF IPNCLCIGFV SFSFHIKKGR EEREHIGMVR YLRCVIPFQF  120
KSPSSHIHVF SLSRLFHYGL DGGFCHDPCS TKRTAENNVA IFWDLDNKPP SSFPPYDAAV  180
RLKLAASSFG AVRYMVAYAN RHAFSYVPPI VRDQRKERKA LDRLETKGAI KPAEPYICRV  240
CGRKFHTNEK LVNHFKQLHE REQIKRLNRL ESARGKQRVQ LAAKFSMKME KYKKAVNGVL  300
TPKVGYGLAD ELKRAGFWVR TVSDKPQAAD TALRNHMVDV MDRQCVGCLV LVSDDSDFVD  360
VLKEARLRCL RTVVVGDNND GALQRCADTG FSWTDIAAGK AKKEAVSVVG RWRDRDILKK  420
LEWTYKPEVE KCEYDPNESE VESENGDIED TISEGDSLAW KEDAGPWWEL ESDTEGTAAS  480
FKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-131	C2H2 family protein