PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR80695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22623.4 Da PI: 8.0807 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.5 | 1.5e-40 | 22 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC++dC++apyf +e+ +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ l+ael+ ++ RWR80695.1 22 PCGACKFLRRKCVRDCIFAPYFDSEHgASHFAAVHKVFGASNVSKLLLRIPAHKRLDAVVTICYEAQARIRDPVYGCVSHIFSLQQQVVDLQAELEFVQ 120 7*********************999879********************************************************************999 PP DUF260 99 ee 100 ++ RWR80695.1 121 TH 122 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MSRYTTTTSS SGNSIVSSGS GPCGACKFLR RKCVRDCIFA PYFDSEHGAS HFAAVHKVFG 60 ASNVSKLLLR IPAHKRLDAV VTICYEAQAR IRDPVYGCVS HIFSLQQQVV DLQAELEFVQ 120 THLASFELPT HQSRSLVSTT ASSYSASTSS LSANINSQQL QTLPEAANGR RSPPESSHSI 180 DDEFQSLAQE FLSIYFPGVR FPHSKSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 9e-59 | LBD family protein |