PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80544.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 558aa    MW: 62846.1 Da    PI: 6.0777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.32.2e-1192285571339
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv+lL++c+ea++s++l+ ++++L+rl e+asp+g p++R+aayfteALa r a+ +++++++ pp+e +   +++++++++l++++sPi+kf h+t N
  RWR80544.1 228 LVSLLVACVEAIESRNLATINQFLSRLGEIASPEGAPIHRVAAYFTEALAIRTAKLWPSVFQIAPPRELD-LAEDDVATSFRLLNHLSPIPKFLHFTSN 325
                 689****************************************************************997.6789999999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 +++l+a+eg++rvHiiDfdi+qGlQWp L+q+LasR ++p ++RiTg+g+    s++el+ tg+rLa fA+++++pfef++ v++rled++l++L+vk+
  RWR80544.1 326 EMVLRAFEGKDRVHIIDFDIKQGLQWPGLFQSLASRHNPPTHVRITGIGE----SNQELQDTGDRLAGFASAFNLPFEFHA-VVDRLEDVRLWMLHVKE 419
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 +E++aVn+++qlh++l ++   +   +++L l++s++P++v ++eqea+hn++++ +rfl++leyysa+fds+ ++lp ++ +rikvE++ ++rei+n+
  RWR80544.1 420 HESVAVNCIFQLHKVLYDESGGA--LRNLLGLIRSTNPTIVLMAEQEAEHNHPRWTRRFLNSLEYYSAIFDSIGSSLPLDNPARIKVEEM-FAREIRNI 515
                 **************996554433..478**************************************************************.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                 +ace ++r+erhe++ +Wr+ +ee GF+ v ++e+++ q ++
  RWR80544.1 516 LACERSDRVERHEKFDTWRRLMEEGGFRCVGVGERETLQSRC 557
                 ************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MHLPRLVLSF IEGFSHLGFL QSDTKRSCGE LWEKMQVSDA ELVSEVYPEL ELQMQWSSFF  60
ARICKCRFTS LEQKKFLAKR KRSCSGNANS PLELGGGDFW LPPTVEDPRI MLGITSLPPR  120
VPFPTSSSAE EERVCFVPRE RNNNPWVKSV VTEITDKGDK GVYTSEGSKK AKSSSSSASS  180
ESHSFGPRLN EESSAIEEGN GSHIRYTTDG VGTTGNESTQ EGNYGLELVS LLVACVEAIE  240
SRNLATINQF LSRLGEIASP EGAPIHRVAA YFTEALAIRT AKLWPSVFQI APPRELDLAE  300
DDVATSFRLL NHLSPIPKFL HFTSNEMVLR AFEGKDRVHI IDFDIKQGLQ WPGLFQSLAS  360
RHNPPTHVRI TGIGESNQEL QDTGDRLAGF ASAFNLPFEF HAVVDRLEDV RLWMLHVKEH  420
ESVAVNCIFQ LHKVLYDESG GALRNLLGLI RSTNPTIVLM AEQEAEHNHP RWTRRFLNSL  480
EYYSAIFDSI GSSLPLDNPA RIKVEEMFAR EIRNILACER SDRVERHEKF DTWRRLMEEG  540
GFRCVGVGER ETLQSRCC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-164GRAS family protein