PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR80405.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GATA
Protein Properties Length: 298aa    MW: 32997.2 Da    PI: 9.6021
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR80405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17202236135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C +  Tp+WR gp g+ktLCnaCG+++++ +l
  RWR80405.1 202 CSHCLAQRTPQWRAGPLGPKTLCNACGVRFKSGRL 236
                 *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MDFCRNVSVS GGLPSEYPPE TVISQESSKL DEFFPGENKE LDVGLEWLSV FLEDCFSSSG  60
YNLPQANPNL TQPTHLQSPN SNPSKPSETH PRTSLQDLVL PLPGKARTKR RRRRIPTAII  120
KTPSSSSSSA STTTTHLSGG PHGHVQEQPS HVISSDPPLL HQAYWLAESE LFVVPKEKEK  180
VVEEEGGSSG RVEVGPGQPR RCSHCLAQRT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY  240
RPAKSPTFLS YKHSNSHKKV MEMRMAMPSY PYRSCRNRTA SAGGPSDTSR RFNRMDMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114KRRRRR
2109115KRRRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-33GATA family protein