PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79657.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 381aa MW: 43057.9 Da PI: 6.9049

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	116	161	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ RWR79657.1 116 RGHWRPAEDAKLKELVSQHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 161 899***************************.*********996 PP
2	Myb_DNA-binding	55.5	1.3e-17	168	211	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ RWR79657.1 168 RRAFSEEEEEKLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 211 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MSLQQIQFGF CQQQDGEGFR KYTELSFLPS GEADSKRNEM GFQLPAPTFH QQNKDWSFMA 60 FEGRDPRMSD GWGGEYFGNE KNEESFGSFG QGEEEDGERL AVGKDHESGH SKLCARGHWR 120 PAEDAKLKEL VSQHGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEEKLL 180 AAHRLYGNKW AMIARLFPGR TDNAVKNHWH VIMARKHREQ SSAYRRRRPP SSSQVLHKGV 240 EMVNTSNAGS ESTITSNRDE TTSTGTDLSL SSSGMILPGA FTRFNPPNPQ PFEFLRGFSE 300 KAIVRNGFYE KCDGTINAFH QSCPMMMMGA DQLGYSDYNS QASAIESISN NKMKLLVNGE 360 CDQGRENISL PFIDFLGVGA R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MSLQQIQFGF CQQQDGEGFR KYTELSFLPS GEADSKRNEM GFQLPAPTFH QQNKDWSFMA  60
FEGRDPRMSD GWGGEYFGNE KNEESFGSFG QGEEEDGERL AVGKDHESGH SKLCARGHWR  120
PAEDAKLKEL VSQHGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FSEEEEEKLL  180
AAHRLYGNKW AMIARLFPGR TDNAVKNHWH VIMARKHREQ SSAYRRRRPP SSSQVLHKGV  240
EMVNTSNAGS ESTITSNRDE TTSTGTDLSL SSSGMILPGA FTRFNPPNPQ PFEFLRGFSE  300
KAIVRNGFYE KCDGTINAFH QSCPMMMMGA DQLGYSDYNS QASAIESISN NKMKLLVNGE  360
CDQGRENISL PFIDFLGVGA R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	229	YRRRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	1e-66	MYB family protein