PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79600.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 377aa MW: 41901.1 Da PI: 8.8694

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.6	6.4e-40	115	267	4	135
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eaesssssa 82 + rhski T++g+RdRR+Rls+++a++fF Lqd+LGfdk+skti WL++++k+ai elt+ +s+s+ + e+ ++++ + RWR79600.1 115 NRERHSKIFTAQGLRDRRMRLSVDVARKFFGLQDMLGFDKASKTIGWLMTKSKTAINELTKGlsqsdgcggdsdggenlTSESEDISgldETTADVNHQ 213 689********************************************************97777777777666665433333222444444444444 PP TCP 83 snsssgkaaksaaksk.ksqksaasalnlakesrakarararertrekmriknk 135 +n+ ++k+ +a+k + ++ +++a+ akesra ara+arertrekm++k + RWR79600.1 214 ENDLKQKSLVAAPKVNwNQGSKKATICPAAKESRAIARAKARERTREKMSKKLD 267 4444446667776544144455555677778****************99855 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MMFPFNHGKN CIPRSYDADQ CLLGEQTFCR NEPTSSFNQL SAFLDYNSRF LNYEHELLSR 60 LLTKPPQMVS TSNAITSVAD VGANNTEMAV SGTTQKMHFS EKSYPVAVGR KRSSNRERHS 120 KIFTAQGLRD RRMRLSVDVA RKFFGLQDML GFDKASKTIG WLMTKSKTAI NELTKGLSQS 180 DGCGGDSDGG ENLTSESEDI SGLDETTADV NHQENDLKQK SLVAAPKVNW NQGSKKATIC 240 PAAKESRAIA RAKARERTRE KMSKKLDKSK QLPKGSGPYQ LNPLIPLGFP GESSSCISLD 300 KKSIELRGEI SEPNKLGLSQ YDYYQHISNS QGENSSGLIS FNNNGMMTFF PENWDMSSTR 360 TRFSCCDTPN MHLFTVG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MMFPFNHGKN CIPRSYDADQ CLLGEQTFCR NEPTSSFNQL SAFLDYNSRF LNYEHELLSR  60
LLTKPPQMVS TSNAITSVAD VGANNTEMAV SGTTQKMHFS EKSYPVAVGR KRSSNRERHS  120
KIFTAQGLRD RRMRLSVDVA RKFFGLQDML GFDKASKTIG WLMTKSKTAI NELTKGLSQS  180
DGCGGDSDGG ENLTSESEDI SGLDETTADV NHQENDLKQK SLVAAPKVNW NQGSKKATIC  240
PAAKESRAIA RAKARERTRE KMSKKLDKSK QLPKGSGPYQ LNPLIPLGFP GESSSCISLD  300
KKSIELRGEI SEPNKLGLSQ YDYYQHISNS QGENSSGLIS FNNNGMMTFF PENWDMSSTR  360
TRFSCCDTPN MHLFTVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-24	TCP family protein