PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79186.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 452aa MW: 49823.1 Da PI: 7.5498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	191	212	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H RWR79186.1 191 FCVICGKGFKRDANLRMHMRGH 212 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MIRESVDPTV QVQWSGEDTG GLLMRQQIVV ADTASIIVQV LSTAGRLLHG RTEIGLPGFS 60 QLGHLLGQNL QEVVRIGSSV DVKAGAGDAS GPSWHGSYSL ESLNLGIDGA DGRSKENRKI 120 IPIGAEDDYG SWVEKHVCSV QDTESSSPTQ DLDTRGAAKD GEEQSEKVES PGCYEVLEVD 180 KEEILAPRSH FCVICGKGFK RDANLRMHMR GHGDMYKSME SLANPNKGMK MADLVRFRRY 240 SCPFEGCKRN RKHKKFQPLK TILCVKNHYK RSHCSKNYIC KHCNRKKFSV IADLKTHEKH 300 CGKDKWQCSC GTTFSRKDKL FGHVALFQGH SPILPANDLI GSGAPDVVVN RMNNGHGHRT 360 VVRAPTPNCG SDHNSSAEYK RVEFVRNQHT VLAETNFPRE ESNCNFTVDD IGSPDGLLHL 420 SPTLTGGAFS LHSLLSCDFM ETNGEDPNFG DA

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MIRESVDPTV QVQWSGEDTG GLLMRQQIVV ADTASIIVQV LSTAGRLLHG RTEIGLPGFS  60
QLGHLLGQNL QEVVRIGSSV DVKAGAGDAS GPSWHGSYSL ESLNLGIDGA DGRSKENRKI  120
IPIGAEDDYG SWVEKHVCSV QDTESSSPTQ DLDTRGAAKD GEEQSEKVES PGCYEVLEVD  180
KEEILAPRSH FCVICGKGFK RDANLRMHMR GHGDMYKSME SLANPNKGMK MADLVRFRRY  240
SCPFEGCKRN RKHKKFQPLK TILCVKNHYK RSHCSKNYIC KHCNRKKFSV IADLKTHEKH  300
CGKDKWQCSC GTTFSRKDKL FGHVALFQGH SPILPANDLI GSGAPDVVVN RMNNGHGHRT  360
VVRAPTPNCG SDHNSSAEYK RVEFVRNQHT VLAETNFPRE ESNCNFTVDD IGSPDGLLHL  420
SPTLTGGAFS LHSLLSCDFM ETNGEDPNFG DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	3e-95	C2H2 family protein