PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR79160.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GATA
Protein Properties Length: 432aa    MW: 48244.3 Da    PI: 6.1087
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR79160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.5e-17352386135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C + kTp+WR gp g ktLCnaCG++y++ +l
  RWR79160.1 352 CSHCLVQKTPQWRTGPHGAKTLCNACGVRYKSGRL 386
                 *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MGGKYNNRWA KSPVLAGHGR FLSLPTLNMP HQTLPIFSNF HLSAIISSPL SILHQEEADM  60
ESVDAVTALK SSFRPEMEGM KTTPHHHHHH HQQQQQQSLN DEVFGADELD GFLDFSNEDV  120
NEFLSEENQE EVKEEAEEEE EEEEEEKEWS CESVLSTEDT HLGKTLESNS KNDFEPQLCV  180
PMDDLAQLEW LSHFVEDSFS KFPSFNDSVS ILRETPIPNE GQKSDNSSHS TQTESKENRT  240
GCLALTMETP VPAKARSKRS RTGGRLWFNK THFTESSPTS SSSSSSSSSS SSSSSSSFLQ  300
PSPSSCLIFA NTTQSQDLFD FLGKPPGKKP KKEKKRPPAA SDNTQLQPQR RCSHCLVQKT  360
PQWRTGPHGA KTLCNACGVR YKSGRLLPEY RPAGSPTFLS NVHSNSHRKV LEMRRKKEVA  420
GPEPGLVAVQ SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330337PKKEKKRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-40GATA family protein