PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR79118.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 613aa    MW: 67805.5 Da    PI: 5.376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR79118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.11.2e-1262536092374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAeavs++++e+a+++L ++ el++p g++ qR+aayf eA+ arl++s+ ++y+ lpp++     s++ ++a+++f+ +sP++kfsh+taNq
  RWR79118.1 253 LTLLLQCAEAVSADNFEEANQMLLEIAELSTPFGTAAQRVAAYFSEAMTARLVSSCLGIYAPLPPTPFY---SQKIVSAFQVFNGISPFVKFSHFTANQ 348
                 579*****************************************************************9...99999********************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 aI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + va+++ +l++e+L+v+++
  RWR79118.1 349 AIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFAETLGLPFEFFP-VAEKVGNLDPERLNVSKR 442
                 *************************************************....***************************.7***************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aV++ +  h+l+d ++s +s    +L+l+++l Pkvv++veq+++h ++sFl+rf+ea++yysalfdsl a+++++s er++vE++ll++ei+nv+
  RWR79118.1 443 EAVAVHWLH--HSLYDVTGSDSS----TLWLLQRLAPKVVTMVEQDLSH-AGSFLARFVEAIHYYSALFDSLGASYGEDSPERHVVEQQLLSKEIRNVL 534
                 ********9..999988998888....**********************.899********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r  + + +e+Wre+le++GF+ ++l+ +aa+qa lll +++ dgy++ ee+g+l lgWkd  L+++SaWr
  RWR79118.1 535 AVGGPARSGEVK-FENWREKLEQSGFRGISLGGNAATQATLLLGMFPCDGYTLVEEKGTLKLGWKDLCLLTASAWR 609
                 ******888776.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    
MDSQAGTHLA APPASAAVAH GVCGFSGLPL FASEREREAE VAVVGADDGG ATAWIDGIIR  60
DLISSATDVS ISQLVQNVRE IIHPCNPSLA ALIEFRLRSL TAAANELSSE ERRKEMVDLQ  120
RQQQQQQHQQ QMSQSSSGLK LYLDSGVENS FAMPITPALN SVNRYLNWVE GAPDENRHLH  180
RQTSAPTTAA TPTLSLTQQN QQQQKLKQQE QPQLQNPPPQ QQQQQQQQQQ QVIRDRKEEM  240
RQQKRDEEGL HLLTLLLQCA EAVSADNFEE ANQMLLEIAE LSTPFGTAAQ RVAAYFSEAM  300
TARLVSSCLG IYAPLPPTPF YSQKIVSAFQ VFNGISPFVK FSHFTANQAI QEAFEREERV  360
HIIDLDIMQG LQWPGLFHIL ASRPGGPPYV RLTGLGTSME ALEATGKRLS DFAETLGLPF  420
EFFPVAEKVG NLDPERLNVS KREAVAVHWL HHSLYDVTGS DSSTLWLLQR LAPKVVTMVE  480
QDLSHAGSFL ARFVEAIHYY SALFDSLGAS YGEDSPERHV VEQQLLSKEI RNVLAVGGPA  540
RSGEVKFENW REKLEQSGFR GISLGGNAAT QATLLLGMFP CDGYTLVEEK GTLKLGWKDL  600
CLLTASAWRP VSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein