PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR79043.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Protein Properties

Length: 931aa MW: 102442 Da PI: 7.2217

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR79043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.5	5e-18	349	449	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l+++ RWR79043.1 349 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDGKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLFMG 445 99************************555566778***********99899999999.*******************987.77778888 PP EE-S CS B3 96 vfrk 99 ++++ RWR79043.1 446 FRKA 449 7765 PP

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence
MGTRTCMNAS CGATSATEWK KGWELRSGGF ANLCDKCGSA YEKLIFCDMF HLNESGWREC 60 NSCGKRLHCG CIASKSSLEL LDSGGIECLN CVKNAKPSSI PSDVLQESTL QSSQRTLSLP 120 GKSLIDEKMN ELHTSEAENI RELQTTPAEF KVDDDSVDKI RLAITQNDSI NSSLGHIKRE 180 QVMLPIRKVG STSFSHINQV TGGASQAVKR DDGKDSKGEK DMHETLAHAC LSMSLVTSNT 240 SNFVEASYNS GTPNLVMALH GAEGREPNKV LYPFQQGQRS RHLLPKPPKM SSGIGLETSK 300 DAVSQIRVAR PPGEGRGRNQ LLPRYWPRIT DQELQQISGD TNSTIVPLFE KVLSASDAGR 360 IGRLVLPKAC AEAYFPPISQ PEGLPLKIQD GKGKDWVFQF RFWPNNNSRM YVLEGVTPCI 420 QSMQLQAGDT VTFSRIDPEG KLFMGFRKAS NSMSMQDTQV PSVTNGALSK ETFYSGVTEN 480 LPIINGYSGL LQLLKGSADP HLSAFSEHLN SSDGDISWIK TGKNGGRPNE DFLLQSTLPE 540 RKKSRNISSK SKRLHIDAED ALELKLTWEE AQDLLRPPPS VKPSIVIVED QEFEEYEEPP 600 VFGKRTIFTA QPSGGLDQWA QCDSCNKWRR LPVDALLPPK WTCADNTWDP RRSSCSVPDE 660 LSSKELENLQ RLNRDFRKRK IAGSYKPAAE REASGLDALA TAAVLGDDGN PTTPSIATTT 720 KHPRHRPGCT CIVCIQPPSG KGPKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAESA 780 LSKKHAWAKD DIEVDSASRC LLPQDPVERD AVQSIESESG QSKILIDKAE MGKGQIDLNC 840 HPEREDDLQS GPARVSMMSL LHAAGLPLET YLKQNGLTSL ISEQQASSGS HVLPQVTGES 900 EGRPPDESYL AKESVADEGH CAPNHARNDP L

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence

MGTRTCMNAS CGATSATEWK KGWELRSGGF ANLCDKCGSA YEKLIFCDMF HLNESGWREC  60
NSCGKRLHCG CIASKSSLEL LDSGGIECLN CVKNAKPSSI PSDVLQESTL QSSQRTLSLP  120
GKSLIDEKMN ELHTSEAENI RELQTTPAEF KVDDDSVDKI RLAITQNDSI NSSLGHIKRE  180
QVMLPIRKVG STSFSHINQV TGGASQAVKR DDGKDSKGEK DMHETLAHAC LSMSLVTSNT  240
SNFVEASYNS GTPNLVMALH GAEGREPNKV LYPFQQGQRS RHLLPKPPKM SSGIGLETSK  300
DAVSQIRVAR PPGEGRGRNQ LLPRYWPRIT DQELQQISGD TNSTIVPLFE KVLSASDAGR  360
IGRLVLPKAC AEAYFPPISQ PEGLPLKIQD GKGKDWVFQF RFWPNNNSRM YVLEGVTPCI  420
QSMQLQAGDT VTFSRIDPEG KLFMGFRKAS NSMSMQDTQV PSVTNGALSK ETFYSGVTEN  480
LPIINGYSGL LQLLKGSADP HLSAFSEHLN SSDGDISWIK TGKNGGRPNE DFLLQSTLPE  540
RKKSRNISSK SKRLHIDAED ALELKLTWEE AQDLLRPPPS VKPSIVIVED QEFEEYEEPP  600
VFGKRTIFTA QPSGGLDQWA QCDSCNKWRR LPVDALLPPK WTCADNTWDP RRSSCSVPDE  660
LSSKELENLQ RLNRDFRKRK IAGSYKPAAE REASGLDALA TAAVLGDDGN PTTPSIATTT  720
KHPRHRPGCT CIVCIQPPSG KGPKHKPTCT CNVCMTVKRR FKTLMMRKKK RQSEREAESA  780
LSKKHAWAKD DIEVDSASRC LLPQDPVERD AVQSIESESG QSKILIDKAE MGKGQIDLNC  840
HPEREDDLQS GPARVSMMSL LHAAGLPLET YLKQNGLTSL ISEQQASSGS HVLPQVTGES  900
EGRPPDESYL AKESVADEGH CAPNHARNDP L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	758	769	KRRFKTLMMRKK
2	758	771	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein