PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78668.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 687aa MW: 76273.9 Da PI: 5.8863

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.4	5.6e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+++ + +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +++el+ RWR78668.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmS-QHPPCQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGENGELR 222 99***************************63.4444569********************************************..449999 PP EEEE- CS B3 94 vkvfr 98 v+v+r RWR78668.1 223 VGVRR 227 ***97 PP
2	Auxin_resp	110	2.4e-36	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+++++k++++ ++k+s+GmRfkm+fe+++++err+sGt++gv+d++++ W nS+WrsLk RWR78668.1 253 ASHALSTGTLFSVFYKPRTSQSEFIISINKYLDTRNHKLSIGMRFKMRFEGDEAPERRFSGTIIGVEDAQSSCWVNSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MAHAVPNQPP GGHVSGASGN VLYNELWHAC AGPLVSVPRE QERVYYFPQG HMEQLVASTH 60 QGLDQQIPSF NLPSKILCRV VNVQLRAEPE TDEVYAQITL QPELDQGEVT SPDPPLPEPQ 120 SCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ HPPCQELVAT DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI 240 SSHSMHLGVL ATASHALSTG TLFSVFYKPR TSQSEFIISI NKYLDTRNHK LSIGMRFKMR 300 FEGDEAPERR FSGTIIGVED AQSSCWVNSE WRSLKVQWDE PSSIMRPDKV SPWELEPMLA 360 TNPLTSQPAP KNKRARPLPS TLPELPAFGP WKSADNSGLS FSYSGLKRGR EQCTLPNSTP 420 LFPPIPESGN FGFSGNSAAA PISCDPMFWS NRVEPLPEAV VTGRSRIAGE KRQETGNGCR 480 LFGIQLVENS PMEEITMTAT VSGKDGDQPV QSLDADSDQQ SEPSNTHQSD IPAVSSEPDK 540 SCLRSSQEMQ SRQIRSCTKV HMQGVALGRA VDLTRFDCYD ELFKKLEEMF GIEGELCGHT 600 KKWQVVYTDD EDDMMLVGDD PWHEFCIMVR KIFIYTCEEA KKLTPKSKLP INAEENPGKL 660 AADDNVAPSA SVDEASVGNR FSQDQPC

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MAHAVPNQPP GGHVSGASGN VLYNELWHAC AGPLVSVPRE QERVYYFPQG HMEQLVASTH  60
QGLDQQIPSF NLPSKILCRV VNVQLRAEPE TDEVYAQITL QPELDQGEVT SPDPPLPEPQ  120
SCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ HPPCQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHALSTG TLFSVFYKPR TSQSEFIISI NKYLDTRNHK LSIGMRFKMR  300
FEGDEAPERR FSGTIIGVED AQSSCWVNSE WRSLKVQWDE PSSIMRPDKV SPWELEPMLA  360
TNPLTSQPAP KNKRARPLPS TLPELPAFGP WKSADNSGLS FSYSGLKRGR EQCTLPNSTP  420
LFPPIPESGN FGFSGNSAAA PISCDPMFWS NRVEPLPEAV VTGRSRIAGE KRQETGNGCR  480
LFGIQLVENS PMEEITMTAT VSGKDGDQPV QSLDADSDQQ SEPSNTHQSD IPAVSSEPDK  540
SCLRSSQEMQ SRQIRSCTKV HMQGVALGRA VDLTRFDCYD ELFKKLEEMF GIEGELCGHT  600
KKWQVVYTDD EDDMMLVGDD PWHEFCIMVR KIFIYTCEEA KKLTPKSKLP INAEENPGKL  660
AADDNVAPSA SVDEASVGNR FSQDQPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein