PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR78553.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family Trihelix
Protein Properties Length: 320aa    MW: 35849.2 Da    PI: 8.1478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR78553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-1654131271
    trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 W  +e l+Li+a++  +er   ++         ++ +W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++ 
  RWR78553.1  54 WNLDEALVLITAKKLEDERRACSAstsklpskTAELRWKWVENYCWNHGCYRSQNQCNDKWDNLMRDYKKVRDYESRP 131
                 *************977776663312233333399***************************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MSNSDHPPTT SSSMVLLDHP HPHHPLLISA TTNTAAAAPA TSTSLPRQYR KGNWNLDEAL  60
VLITAKKLED ERRACSASTS KLPSKTAELR WKWVENYCWN HGCYRSQNQC NDKWDNLMRD  120
YKKVRDYESR PCSSDPNKER GSPSYWDMEK HERKERSLPS NLLFQVFQAL HDVVNRKNAQ  180
KSPAPVVSTA TIAPPPPPPP PPPPPPSQPP LQSPAQMEMT VSSETEEDSE REEPGTKRRK  240
VGSLGSSVVR GASILAETLL ACEEKKDKRH QNVLEVEEKK LKIEENRTQI NQEGLAALIT  300
AVNNLSSSVH ALISDRTDTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237268KRRKVGSLGSSVVRGASILAETLLACEEKKDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-47Trihelix family protein