PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78481.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 652aa MW: 75191.7 Da PI: 8.2586

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	140	227	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk +GFsvr+s++kk ++e+++++fvC keg r+e+ + ++r a+tr +C ak++v+k+k+g w k++ eH+H l+ RWR78481.1 140 NFYNTYAKAAGFSVRRSSEKKV--KNEVIWKQFVCFKEGLRREKVGPNCGAQRLVANTRENCGAKFQVRKNKQGGWIACKFVAEHTHILS 227 6**************99998..6679*************99999999********************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MTNHTVIDGF GEFRSSVVML IVPGPDTSKS HNSDHIYGQG LECIHPAPSS ARQLHGLFGP 60 LDLQYDSMAS ERSQYAVKPQ IESLPFLPRE RPQSQCLCFE TVEKMESAAS STIKSLIPEV 120 DEDKTPRLGM IFSNIEEAFN FYNTYAKAAG FSVRRSSEKK VKNEVIWKQF VCFKEGLRRE 180 KVGPNCGAQR LVANTRENCG AKFQVRKNKQ GGWIACKFVA EHTHILSIPC KTHTLRSHRM 240 TSGAKKKLRV PEVQDSGNEN VDCTEKVARD CGKDKKEEIK GEDGQLLYGH FKHLKEMNPA 300 FLFSIEKDSD DRIKHVFWAD PTFRTSYCEF GDVVRFDMTY KTNKYDLVFC AFTGLNHHGQ 360 SILFGCGLLS NETFESFVWL FNNWLKAMRL GPPKAIITDH DCAIIKTVKS VMPATCHRFC 420 LRHILDKMSM ELGEVAIHTE GLLERAKHIT YNSVTIEQFE SEWNKMLTVF NVVDDNWLKG 480 LYDIRENWVP IYSKHVFFGG MSMTQRSEYI NAFIKQYTSD KSGLYDFILR FERAIACQKY 540 REVKADYEIV NGKPKLKTDL PMEKQMSEIY TRKIFYMFQK QIMSILSCIE KLVKDDVEER 600 TYVVLSFGDG KEIEWKVYFL RRIIDPIIGL ESMRWTWSQI IGILKLVVIM GY

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MTNHTVIDGF GEFRSSVVML IVPGPDTSKS HNSDHIYGQG LECIHPAPSS ARQLHGLFGP  60
LDLQYDSMAS ERSQYAVKPQ IESLPFLPRE RPQSQCLCFE TVEKMESAAS STIKSLIPEV  120
DEDKTPRLGM IFSNIEEAFN FYNTYAKAAG FSVRRSSEKK VKNEVIWKQF VCFKEGLRRE  180
KVGPNCGAQR LVANTRENCG AKFQVRKNKQ GGWIACKFVA EHTHILSIPC KTHTLRSHRM  240
TSGAKKKLRV PEVQDSGNEN VDCTEKVARD CGKDKKEEIK GEDGQLLYGH FKHLKEMNPA  300
FLFSIEKDSD DRIKHVFWAD PTFRTSYCEF GDVVRFDMTY KTNKYDLVFC AFTGLNHHGQ  360
SILFGCGLLS NETFESFVWL FNNWLKAMRL GPPKAIITDH DCAIIKTVKS VMPATCHRFC  420
LRHILDKMSM ELGEVAIHTE GLLERAKHIT YNSVTIEQFE SEWNKMLTVF NVVDDNWLKG  480
LYDIRENWVP IYSKHVFFGG MSMTQRSEYI NAFIKQYTSD KSGLYDFILR FERAIACQKY  540
REVKADYEIV NGKPKLKTDL PMEKQMSEIY TRKIFYMFQK QIMSILSCIE KLVKDDVEER  600
TYVVLSFGDG KEIEWKVYFL RRIIDPIIGL ESMRWTWSQI IGILKLVVIM GY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1 family protein