PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78407.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 480aa MW: 55085 Da PI: 8.7124

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5e-14	26	70	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed +l + ++ +G+++W+++a+++ +t qc+ rw++yl RWR78407.1 26 TWTPQEDNILREHIRIHGTERWTSVAAKFK-DKTSRQCRRRWYTYL 70 6**************************9.***********97 PP
2	Myb_DNA-binding	48.4	2.2e-15	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT++Ed++l +a k +G++ W+ Ia+++ gRt++ +k+r+ + RWR78407.1 76 KGCWTEQEDKILCEAQKIYGNK-WTEIAKMVS-GRTDNAVKNRFST 119 799*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MHAMKPPPQD ARKFEGRKQS DRRIVTWTPQ EDNILREHIR IHGTERWTSV AAKFKDKTSR 60 QCRRRWYTYL NSECKKGCWT EQEDKILCEA QKIYGNKWTE IAKMVSGRTD NAVKNRFSTL 120 CKKQAKLRAT TKENSNEHIN LNNKRVIIQD RHTAAGTSGS MTPLKEMRMH ISDFTRNCNM 180 KERWFQESAT AKQMQLRSPL AVLVQNSNVG NAPTQQHLIN HCRVAVDDEK TDLKVQGMFL 240 RKNDPKVTAL MQQAKFLSLL THEVNTENTS QSNENAWKEL HNFLARYEES KQLRCKILEM 300 EFLLKNLKDS VEDQNSSTTE SRQSLRQLDL HDESQCSSEY STGSTHHWHP TDNKIVEHQS 360 KECLINHSPS IMRETENRQV QINGGSKEGC SATASIDKAA ILPSSDEPRD GDGAICKRSN 420 AEFSSPLQMV PFFQHFEEGI PSPIFTDSER HFLLETLGLA SPSFNANTNP SCRRALLHSL

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MHAMKPPPQD ARKFEGRKQS DRRIVTWTPQ EDNILREHIR IHGTERWTSV AAKFKDKTSR  60
QCRRRWYTYL NSECKKGCWT EQEDKILCEA QKIYGNKWTE IAKMVSGRTD NAVKNRFSTL  120
CKKQAKLRAT TKENSNEHIN LNNKRVIIQD RHTAAGTSGS MTPLKEMRMH ISDFTRNCNM  180
KERWFQESAT AKQMQLRSPL AVLVQNSNVG NAPTQQHLIN HCRVAVDDEK TDLKVQGMFL  240
RKNDPKVTAL MQQAKFLSLL THEVNTENTS QSNENAWKEL HNFLARYEES KQLRCKILEM  300
EFLLKNLKDS VEDQNSSTTE SRQSLRQLDL HDESQCSSEY STGSTHHWHP TDNKIVEHQS  360
KECLINHSPS IMRETENRQV QINGGSKEGC SATASIDKAA ILPSSDEPRD GDGAICKRSN  420
AEFSSPLQMV PFFQHFEEGI PSPIFTDSER HFLLETLGLA SPSFNANTNP SCRRALLHSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-118	MYB family protein